Detail information of Os02g0782200_circ_g.3


General Information
CircRNA Name Os02g0782200_circ_g.3
ID in PlantcircBase osa_circ_016811
Alias NA
Organism Oryza sativa
Position chr2: 33160636-33163214  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene Os02g0782200
Parent gene annotation Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07822
00-01);NOT2/NOT3/NOT5 domain containing protein. (Os02t0782200-0
2);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07
82200-03)
Parent gene strand -
Alternative splicing Os02g0782200_circ_g.2 Os02g0782200_circ_g.4 Os02g0782200_circ_g.5 Os02g0782200_circ_g.6 Os02g0782200_circ_g.7 Os02g0782200_circ_g.8 Os02g0782200_circ_g.9 Os02g0782200_circ_g.10
Support reads 36
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0782200-03:6
Os02t0782200-01:2
Os02t0782200-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAATTTCCAATATTACTTACTGAATTAGCACCTTGCTGGTGTTGCTGACGATTTGGTGGGTA
GTTACTTCCTAAGTTAAAGCCAACTGATCTTGACATaagaaatgtttcacctaacgttttggga
tgaagggatagctggcttcttctctatttgatcataatggagaacaaagttgtcctgcagaaaa
acatacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGAAATGTTTCACCTAACGTTTTGGGATGAAGGGATAGCTGGCTTCTTCTCTATTTGATCATA
ATGGAGAACAAAGTTGTCCTGCAGAAAAACATACACAATTATAATTCACAAATTTTCACAAAAG
TATTATGTGATACAACTTTACATTGACCAAACATCCAAACCTTGCGGATTGTCTCCCAGTTGTT
TGGATCAAAGCAACCATAAGATCCTCGTTCATAATGAGGTGTTTTGACCAGAGGCTCAACATTT
GGAATTCTGGTGAGCCACACACGCACTTCTTTATGGTAGAACCATCCTCGAGTATACCTGCGGA
AAAGATGGACATATACCATGGTTCAATTCAACAGTTAAAACAAAAGTAAAAAAAAAAGGTTTAA
TCTCCATTTGGTATTTGGTTGTGCTGTGCTGCACCTCAAAGTGGGTAACACATATTTGCCGTAT
GTATTAAGATATTAATAAATTCTAAGGAAGTAAATGCATATCCAATATCAAGCCTCATGAAACA
CAAGGAAATATAATAATCAATTACATGAATAACATGAAAGATAGCTAATTGATAGATTGAAAGA
TTCAAAGCCTTAAACATCCAGAATAATTCAGGATCATGGAACATGTTCTGGTGTTGTGCAACTA
GTAGTCACCCATCTGGATTACGAACAAGTCCTAAGCGTACCCTTTCAAATAAATAAAATACACA
ATATTACTTGTAAAAAATTGCTGTTGATCCTAAACCAATTGGCAGTCCACTAGTCCCATACTAA
TCCAAGCTGGTCTAAACCAGCCTACTCCATCCGGTTTCAAATTTCTTGACGTTTTAGATATGAT
CTCACATACCAAGGAGTGTTTAATTAGGGTGCCTATTCCCTGTTATACCCATATTAAATACTGC
CATATGCTTGAATTAATCAATATTTGGATGTATCCTAGTGGTTCGAAACAACAACCAGATGCAA
AGCATGCAGGTTCGAATCCTAGCGTCGCTTCGTTTTTCTCCTTTTTCTTTCCACGCGTGGATTT
TCTCTACAATTTTGCACGTGCAGCACACGCTGGCTGGTGTGTTTTTCTCGCTTGTGCGGGGGAC
ACGGGAGACTACTCAACTTTAAATGGAATGCATGCATAAGAGGCAAACAATTCCAAAATAACCT
AATAAATCCCAAACGTCAACAATTACCATACTTTGGATACAAGGCTAGAACGTCAACATTTTTA
TACCGGAGGGAGTATGTCCTACACAAGCCCAACAAAATGCAAAACCCACGAATACAGATCAATT
TAAGTCCATGGTCTATCCAAGATGTTATATTAGATAATGTTGGTGGACGGAGGGCCAAGATGTG
GCCAATCTAGTTGTCACCATTAACTTGGTTTGCACCCATCATTAACAGAAGGATTAATGATGCG
TAACCAGTGGAAACTATGCTACAAATAAACATGGATAAGCACGACTATGCAAATCAAAACCAAC
CCCTAGCAACAAGATGTAAATGAGAAGACCGGTGAAACCATGTACTCACAGCTCACTAGCAGCA
CATAGCTGAGCTTCATCCCTTGGCATGCTGCAAACCAAAGAAAAATGATAAATCTTTCATAAAA
AAACAAACTATACTCACATTATTTGTTGCAACAAATGGACTAGCCTAATAGAATTGAAGTGGGA
CACACTTAATGGTAGATGTACCTATAGAAGATGTAAAACAGTGTTGGCGTCTGGAATTTCTGAA
AATGTATAGGCTGCAAGAGGCAGAACACAATTACAAATATATAAGTCATAACATGAAGCAAATA
CATTGAGACAATAAATTCTGCCTATGTTTAAGAACAACTAGTTTAGGAAATTATGATGGTCAAC
ATCCAATAAAAGATGGCAAATGCACAGCCAGCCATTACATATTAAAAAATAGCACACAGTGACA
GGCAGCTTACTTGTAGTGGTGGAGGTTGCTCAGCGGAGTAGCAAGCTGGAGTATGAAACTCAGG
TTCTCCTTTTGCTGGCTCGTTTGACCATGGAGAGCCAAATGTCTTGTACAGATTGTCTGGTGAG
TTCAAGTTTAAACCCAATGTTGTCAAATCTATTCCTAAAGCAAGAGATGATAAGTCAACATCAT
TCATCCTGATAACTCCTAGCAATCCCATCAAGCCATATGGATCAGATGGTGTTTGGCCCCCCTG
GATGGACTTTAGACTCTGATCCCTATATGACTGGGTAGCTGAAGACACCTGCTGCAATCTGAAA
GGATTTTGAGCCTGAGGTTGCTGGTATTGCTGGATAAGTTGCTCATATGATCCCAAACTAGAAG
TTTGATTTGGAGAATTTAGTGGTCTTAGTCCGATATTTGGGGGACCAGCATTCTGAACCTGATA
ATCATAATTGAGATTATTATTACTTGCATCAAAGGGTCAAAACAGAAAATTTGGATACATGCCA
GATCAGAACCATGACAAATGTGGTAGACATTGATTGTTAAGAGTTTTAAGAATTTCCAATATTA
CTTACTGAATTAGCACCTTGCTGGTGTTGCTGACGATTTGGTGGGTAGTTACTTCCTAAGTTAA
AGCCAACTGATCTTGACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.231632015
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017