Detail information of Os02g0782200_circ_g.9


General Information
CircRNA Name Os02g0782200_circ_g.9
ID in PlantcircBase osa_circ_016817
Alias NA
Organism Oryza sativa
Position chr2: 33166866-33166969  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os02g0782200
Parent gene annotation Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07822
00-01);NOT2/NOT3/NOT5 domain containing protein. (Os02t0782200-0
2);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07
82200-03)
Parent gene strand -
Alternative splicing Os02g0782200_circ_g.2 Os02g0782200_circ_g.3 Os02g0782200_circ_g.4 Os02g0782200_circ_g.5 Os02g0782200_circ_g.6 Os02g0782200_circ_g.7 Os02g0782200_circ_g.8 Os02g0782200_circ_g.10
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-GG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGTCAGCATAAACAATAAAATTGCAATATGGATGAAGGAAGTCATTACAACtgaggttacacg
atcatttcaaccagcaacaatgtaccttagtttccacaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 104
Transcript exons: 33166866-33166969
TGAGGTTACACGATCATTTCAACCAGCAACAATGTACCTTAGTTTCCACAAGCCGTCAGCATAA
ACAATAAAATTGCAATATGGATGAAGGAAGTCATTACAAC

Genomic sequence TGAGGTTACACGATCATTTCAACCAGCAACAATGTACCTTAGTTTCCACAAGCCGTCAGCATAA
ACAATAAAATTGCAATATGGATGAAGGAAGTCATTACAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.418428846
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017