Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0782200_circ_g.5 |
ID in PlantcircBase | osa_circ_016813 |
Alias | NA |
Organism | Oryza sativa |
Position | chr2: 33162321-33163214 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os02g0782200 |
Parent gene annotation |
Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07822 00-01);NOT2/NOT3/NOT5 domain containing protein. (Os02t0782200-0 2);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07 82200-03) |
Parent gene strand | - |
Alternative splicing | Os02g0782200_circ_g.2 Os02g0782200_circ_g.3 Os02g0782200_circ_g.4 Os02g0782200_circ_g.6 Os02g0782200_circ_g.7 Os02g0782200_circ_g.8 Os02g0782200_circ_g.9 Os02g0782200_circ_g.10 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os02t0782200-01:2 Os02t0782200-03:3 Os02t0782200-02:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.200563302 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
33163216-33163189(-) |
Potential amino acid sequence |
MSRSVGFNLGSNYPPNRQQHQQGANSVQNAGPPNIGLRPLNSPNQTSSLGSYEQLIQQYQQPQA QNPFRLQQVSSATQSYRDQSLKSIQGGQTPSDPYGLMGLLGVIRMNDVDLSSLALGIDLTTLGL NLNSPDNLYKTFGSPWSNEPAKGEPEFHTPACYSAEQPPPLQPIHFQKFQTPTLFYIFYRCQDQ LALT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |