Detail information of Os02g0782200_circ_g.5


General Information
CircRNA Name Os02g0782200_circ_g.5
ID in PlantcircBase osa_circ_016813
Alias NA
Organism Oryza sativa
Position chr2: 33162321-33163214  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0782200
Parent gene annotation Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07822
00-01);NOT2/NOT3/NOT5 domain containing protein. (Os02t0782200-0
2);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07
82200-03)
Parent gene strand -
Alternative splicing Os02g0782200_circ_g.2 Os02g0782200_circ_g.3 Os02g0782200_circ_g.4 Os02g0782200_circ_g.6 Os02g0782200_circ_g.7 Os02g0782200_circ_g.8 Os02g0782200_circ_g.9 Os02g0782200_circ_g.10
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0782200-01:2
Os02t0782200-03:3
Os02t0782200-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAATTTCCAATATTACTTACTGAATTAGCACCTTGCTGGTGTTGCTGACGATTTGGTGGGTA
GTTACTTCCTAAGTTAAAGCCAACTGATCTTGACATctatagaagatgtaaaacagtgttggcg
tctggaatttctgaaaatgtataggctgcaagaggcagaacacaattacaaatatataagtcat
aacatgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATAGAAGATGTAAAACAGTGTTGGCGTCTGGAATTTCTGAAAATGTATAGGCTGCAAGAGGC
AGAACACAATTACAAATATATAAGTCATAACATGAAGCAAATACATTGAGACAATAAATTCTGC
CTATGTTTAAGAACAACTAGTTTAGGAAATTATGATGGTCAACATCCAATAAAAGATGGCAAAT
GCACAGCCAGCCATTACATATTAAAAAATAGCACACAGTGACAGGCAGCTTACTTGTAGTGGTG
GAGGTTGCTCAGCGGAGTAGCAAGCTGGAGTATGAAACTCAGGTTCTCCTTTTGCTGGCTCGTT
TGACCATGGAGAGCCAAATGTCTTGTACAGATTGTCTGGTGAGTTCAAGTTTAAACCCAATGTT
GTCAAATCTATTCCTAAAGCAAGAGATGATAAGTCAACATCATTCATCCTGATAACTCCTAGCA
ATCCCATCAAGCCATATGGATCAGATGGTGTTTGGCCCCCCTGGATGGACTTTAGACTCTGATC
CCTATATGACTGGGTAGCTGAAGACACCTGCTGCAATCTGAAAGGATTTTGAGCCTGAGGTTGC
TGGTATTGCTGGATAAGTTGCTCATATGATCCCAAACTAGAAGTTTGATTTGGAGAATTTAGTG
GTCTTAGTCCGATATTTGGGGGACCAGCATTCTGAACCTGATAATCATAATTGAGATTATTATT
ACTTGCATCAAAGGGTCAAAACAGAAAATTTGGATACATGCCAGATCAGAACCATGACAAATGT
GGTAGACATTGATTGTTAAGAGTTTTAAGAATTTCCAATATTACTTACTGAATTAGCACCTTGC
TGGTGTTGCTGACGATTTGGTGGGTAGTTACTTCCTAAGTTAAAGCCAACTGATCTTGACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.200563302
Functional Information
Coding potential Y
Potential coding position 33163216-33163189(-)
Potential amino acid sequence MSRSVGFNLGSNYPPNRQQHQQGANSVQNAGPPNIGLRPLNSPNQTSSLGSYEQLIQQYQQPQA
QNPFRLQQVSSATQSYRDQSLKSIQGGQTPSDPYGLMGLLGVIRMNDVDLSSLALGIDLTTLGL
NLNSPDNLYKTFGSPWSNEPAKGEPEFHTPACYSAEQPPPLQPIHFQKFQTPTLFYIFYRCQDQ
LALT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017