Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os08g0439100_circ_g.3 |
ID in PlantcircBase | osa_circ_037187 |
Alias | Os_ciR2702 |
Organism | Oryza sativa |
Position | chr8: 21343749-21347706 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os08g0439100 |
Parent gene annotation |
Protein of unknown function DUF1336 domain containing protein. ( Os08t0439100-01) |
Parent gene strand | + |
Alternative splicing | Os08g0439100_circ_g.1 Os08g0439100_circ_g.2 Os08g0439100_circ_g.3 Os08g0439100_circ_g.4 Os08g0439100_circ_g.5 Os08g0439100_circ_igg.1 Os08g0439100_circ_g.2 Os08g0439100_circ_g.4 Os08g0439100_circ_g.5 Os08g0439100_circ_g.6 Os08g0439100_circ_g.7 Os08g0439100_circ_g.8 Os08g0439100_circ_g.9 Os08g0439100_circ_g.10 Os08g0439100_circ_g.11 |
Support reads | 5/3 |
Tissues | root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os08t0439100-01:6 |
Conservation Information | |
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Conserved circRNAs | osi_circ_017927 |
PMCS | 0.216990772 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21346065-21346092(+) 21345060-21347704(-) 21345017-21347586(-) 21343812-21347699(-) |
Potential amino acid sequence |
MLEMSPSFWDRWKRRHNENFDRSIAFALLSQVAGLREYFAANPALTSDLPSTVVKPKQSDSLII QSELEDSELNDEFYDALARGESFEDEDSDDDDDMIPKAGKVKFKNISWAIAGLAMKPTKASVEK SELVTNSTPVTIDSNHFHGTLRRAKSENDPNSWSEPGGEKFMIRGKTYLTDYTKVENKEGFCFF QTMVSWTRWGIYHFADSCLSQEQTSKAWLRAYKNQFLNMGTKKVEPTRIINSEMPCYSYVGNEP KFLG*(+) MPWRFVLVTSRNLQNGICPILSTKPLSGKNKILLCFPP*(-) MVYAPSCPRNHCLEKTKSFFVFHLSVICQVSLSSYHELLSTRLTPRVWVILTFRSSKGAMEMV* (-) MPHLVHETIVWKKQNPSLFSTLV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |