Detail information of Os08g0439100_circ_g.3


General Information
CircRNA Name Os08g0439100_circ_g.3
ID in PlantcircBase osa_circ_037187
Alias Os_ciR2702
Organism Oryza sativa
Position chr8: 21343749-21347706  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os08g0439100
Parent gene annotation Protein of unknown function DUF1336 domain containing protein. (
Os08t0439100-01)
Parent gene strand +
Alternative splicing Os08g0439100_circ_g.1 Os08g0439100_circ_g.2 Os08g0439100_circ_g.3 Os08g0439100_circ_g.4 Os08g0439100_circ_g.5 Os08g0439100_circ_igg.1 Os08g0439100_circ_g.2 Os08g0439100_circ_g.4 Os08g0439100_circ_g.5 Os08g0439100_circ_g.6 Os08g0439100_circ_g.7 Os08g0439100_circ_g.8 Os08g0439100_circ_g.9 Os08g0439100_circ_g.10 Os08g0439100_circ_g.11
Support reads 5/3
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0439100-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGACGAGCGAAAAGTGAGAATGACCCAAACTCTTGGAGTGAGCCTGGTGGAGAGAAGTTCATG
ATAAGAGGAAAGACTTACCTGACAGATTACACTAAGgtggaaaacaaagaaggattttgttttt
tccagacaatggtttcgtggacaagatggggcatatagtaagtactaagtctttattatatcac
agctttat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGAAAACAAAGAAGGATTTTGTTTTTTCCAGACAATGGTTTCGTGGACAAGATGGGGCATAT
AGTAAGTACTAAGTCTTTATTATATCACAGCTTTATTTTAATATATTTTAGATCTCTACTACTA
CTCTTTGACACTCCTAAATGGACGGTCCTAAAATATATAATTAGAGGTTCACCTAGCTAGATTG
AAATATGATGTAATGAATTCAACCTATCAACTTTGAATACAAATTACTTGACAATTTTCTAGAT
CTTATGACGTATCAGTTGATTTCCCCGTGTGTTGTTATGTTCTGTTAGGTGCTATTAACAACAG
GAAATGAATTGGTTAACTTGGACAGCAGGAGGGGTACATAATCCGGTGTGCTAAGATGTGAGGT
GCAGGTGGTGGTGGTCACCTTGGGGCATGTCCATCAGTAGTGAATACTAGTAATCACTAGCAAA
ATGGGGACTGAGGAATCTGATAGGAAGGTTGGATGCCTACAAAGAATCAATTGATTCCTAACAC
TTGTCAGTAGGGCTATAGAGGATGCCCTAGGGAAAAAATATCGACCAAGATTGATAGGACTGTG
CTGGCCAGTGCTTCCAGGAATACATTTTTACTGGAGTTGACTTTGAAGTAGTTGAGTTGATATC
AGTTGAGGACCAAATTCCTTCATATTTCTGAAAGAACTGTGACATGATAATGTTTTACATGAGA
TAGTGCACAAAAGTCACATCAAATTGATGTATAAATTTGATGGGTTGGTCTGCATCAGCATTGC
CCAATCTTTATGAACCAGTGACCAGCTATCTAAATGCTACTATGTTCGTTACTTGTGGTTGGGA
GCGAATCCCTCCCGCACGGGAAACAGAGCGGTCCATTAGTGCGTGATTAATTAAATATTAGCTT
TTTTTTCAAAAATGGATCTATTTGATTTTTTAAAGCAACTTTCTTATATAATTTTTTTTGCAAA
AAAAATACCATTTAGCAGTTTGAAAAGCGTGCACGCGGAAAAAGAGGGGAGTGAGTTCCCAACT
CTGGGTGCCGAACTCAGCCTTAGGTTCTAGGTATAAATTAATTAAGTATACCTAGAACCTTGAG
GTTTCCAGTTTGACGCACAAGCTTTCTGAACATAAGAAATCATGCTGTGGTCTATGTATAGGGC
AACTAGCTGTCAAGTGTGTTAACAGCACATATAGCAGCCGTCTTCCACGATATACTTTGTGTTA
TGGTTCAAATGAGTTGGTTATGTGTTCATTTTCCCCCCTTGGTGCAGCCATTTTGCAGATTCCT
GCTTGTCACAAGAACAAACCTCCAAGGCATGGCTACGAGCGTACAAAAATCAATTGTAAGATTC
ATCTTTCATACTTTATTTGTATTTTTAGCATGATTCAGTGAGTTTGAGTTGTTTGTTGGTCCTG
TATCTTAGCATCAGCTTGTTTTGTGATGACTTGAAGCAGGTAGAGTAGGAATAACCATTTATTT
TTCTGTTTCAGAAAATTTTGGTCAGACCATGTTCTCAGTTAGTTAAGTTTTGTCGTACCATGCC
CCCATTTATTCTCTCATCATATGCGTTCATTTATTATTACTTACCATCCTTTCTCATCTTCTCC
AAACAATTAATGGATGGATCCTTTCTTATTAGAAATTTGGCTATGCAACTTTCATATGCCCAAA
ACTTATTATATTCTAAACAATAATTATGGTCAAAGTAAACTTATTTTGACTGCATGGGTCGACA
ACGACATTCTTTTGTGACCGGAGGAGTATGTTGCAGTAGTTGCATAGATGAGTATTTCAGAAAA
AAAAATGAATCACTTGTAATCAACTTGGGTGGATAGCAATATCACACCAGCCTATTCATAGATA
ACTTGAGTATGTCGTAGTATAACTTGGGTGGATAGCAATGCCACGCCTAGCACTACTGCTATTT
TGGATGCTGTGGCAAGAGAGTTTGTTATGGTGCTGCTGGGGCAAGAGCACTCCATGAACTCTTG
TCCCGGTCGCTTCCCACTTAGGAGCCTAGCTCCTGTGAGAGTTGTTGCGTATCTCTTCGGCGAG
GCTTTTTCTTCCTTTCCCTCTAGAGTGTTTCTTGTGAATCACTCTATTGTACATACTCTTTCTT
CTTCTTAATGAAATGAAATGCATGGCTCTTGCATTTTCGAGAAAAAAGAACTTTTTGCCCATCA
CTCTCAAAACTGGAAAAAAAATTAGGGTTTCACATTTTATTGTAATTTGTTAATTCCAACATTT
CTTTCAGCCTCAACATGGGAACTAAGAAGGTTGAACCCACCAGGATCATCAACTCCGAAATGCC
TTGTTACTCATATGTTGGAAATGAGCCCAAGTTTTTGGGATAGATGGAAGAGAAGACATAACGA
GAATTTTGACAGAAGTATTGCTTTTGCTTTGCTCAGCCAAGTAGCAGGTTGGTCAGGTTTGCTT
TTATTGCAAGGAATACTATTTCCATTTAGGACATTATAATGATGCCCTTGTATTTCATATGGCC
AGGTCTAAGAGAATACTTTGCAGCAAATCCAGCTTTGACATCTGATTTGCCTTCAACAGTAGTG
AAGCCCAAACAGTCTGATTCTTTGATCATCCAGAGTGAACTGGAAGATTCTGAACTTAATGATG
AATTCTATGATGCACTTGCTAGAGGCGAATCCTTTGAAGATGAGGATAGTGATGACGATGATGA
TATGATTCCTAAGGTGATATTTTATTGTTTATCAGCGTTATGCAATCAGACTGTTATGTATTAT
ATTATGTTCAGTAATAAATTGAGACTCGGTTTCCTTATGAAATTTCTGTACAGGCTGGAAAAGT
GAAGTTCAAGAATATTTCATGGGCTATCGCAGGTCTTGCTATGAAACCGACTAAAGGTCATAAT
CGTAAACACAAGAGACATTTCAACTCTTCAAGCACTGGTAGACAGTATGTTGATAAAAAAATAC
ATGCATTTACCATTAGTTTCTCAACCACAAAAAGGACATTTATACACAAAGTGTGCACATCTGT
GTTATAGTGGATGCAATGTCTCTGTTGCCTTTGTCTATATTTGTAAAAAAAATTATGCCAGTTA
ATATTCCTTATGTTTTTCAATAACTGTCAAGTTAACTCTTCTATGCAAAATCCGACCAATTATA
GCATCTAATATATTTAATTAGATCGAAGGAAAATCATACTGTTAGGTGTGCCATGCATAAAAAT
TACAATATTTATTTTTTATTTTGAACTAGTTATAAATTTACTAAAAAGAATTATGATTAAAGTT
TGAACAATGGAGTCAATGGTGACAATCATTTGAAAATGAAGGAAATTGCAGCACGCCATCTTTT
ACTCTTCAACCTGCTAGAATGCATAACTGCAAGTTGCTAGCTTGCATTACAACATTTCTCATGG
TTCATTTCAGTCATTTTGGATATCTTAAGGTAATCATTGGAGAAGGAGAAAAAGTGATATGTTG
TAAATTGTAATTAATCAAGTAAAATAGTACTACCAAAAAGCATATGGGATAAACTAAAGAATGA
TATATCCTATGGGCATTTGTCTTTTTAAAGCTTGTTCACTTGTTCCCTTTTGTTTCAAGTGAAG
GAGAACATAGGTGATAAAAATGTGGTACACAGAAGGGCGGTAAGAATCACTAATTTGCTATAGT
TGTAACCATGTACCCTCAAATCCAGAGATCATGTTGAAATTTCGCTGTCCTTGAATTTCTTTTC
TTTTCTTTTTTTTCACAGAGGAAGCTGTCCTTCTTAACTATGATTTTACTTCTAATATGTTCTC
CTGCAGCTTCGGTTGAGAAGAGTGAATTGGTTACAAATTCAACTCCGGTAACTATTGATTCAAA
CCATTTCCATGGCACCCTTCGACGAGCGAAAAGTGAGAATGACCCAAACTCTTGGAGTGAGCCT
GGTGGAGAGAAGTTCATGATAAGAGGAAAGACTTACCTGACAGATTACACTAAG
Conservation Information
Conserved circRNAs osi_circ_017927
PMCS 0.216990772
Functional Information
Coding potential Y
Potential coding position 21346065-21346092(+)
21345060-21347704(-)
21345017-21347586(-)
21343812-21347699(-)
Potential amino acid sequence MLEMSPSFWDRWKRRHNENFDRSIAFALLSQVAGLREYFAANPALTSDLPSTVVKPKQSDSLII
QSELEDSELNDEFYDALARGESFEDEDSDDDDDMIPKAGKVKFKNISWAIAGLAMKPTKASVEK
SELVTNSTPVTIDSNHFHGTLRRAKSENDPNSWSEPGGEKFMIRGKTYLTDYTKVENKEGFCFF
QTMVSWTRWGIYHFADSCLSQEQTSKAWLRAYKNQFLNMGTKKVEPTRIINSEMPCYSYVGNEP
KFLG*(+)
MPWRFVLVTSRNLQNGICPILSTKPLSGKNKILLCFPP*(-)
MVYAPSCPRNHCLEKTKSFFVFHLSVICQVSLSSYHELLSTRLTPRVWVILTFRSSKGAMEMV*
(-)
MPHLVHETIVWKKQNPSLFSTLV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017