Detail information of Os08g0439100_circ_g.8


General Information
CircRNA Name Os08g0439100_circ_g.8
ID in PlantcircBase osa_circ_037192
Alias NA
Organism Oryza sativa
Position chr8: 21346597-21346702  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os08g0439100
Parent gene annotation Protein of unknown function DUF1336 domain containing protein. (
Os08t0439100-01)
Parent gene strand +
Alternative splicing Os08g0439100_circ_g.1 Os08g0439100_circ_g.2 Os08g0439100_circ_g.3 Os08g0439100_circ_g.4 Os08g0439100_circ_g.5 Os08g0439100_circ_igg.1 Os08g0439100_circ_g.2 Os08g0439100_circ_g.3 Os08g0439100_circ_g.4 Os08g0439100_circ_g.5 Os08g0439100_circ_g.6 Os08g0439100_circ_g.7 Os08g0439100_circ_g.9 Os08g0439100_circ_g.10 Os08g0439100_circ_g.11
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CA-AG
Number of exons covered Os08t0439100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTCTTCAAGCACTGGTAGACAGTATGTTGATAAAAAAATACATGCATTTACgtcttgctatg
aaaccgactaaaggtcataatcgtaaacacaagagacatttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCTTGCTATGAAACCGACTAAAGGTCATAATCGTAAACACAAGAGACATTTCAACTCTTCAAG
CACTGGTAGACAGTATGTTGATAAAAAAATACATGCATTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.210691824
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017