Detail information of Os08g0439100_circ_g.5


General Information
CircRNA Name Os08g0439100_circ_g.5
ID in PlantcircBase osa_circ_037189
Alias NA
Organism Oryza sativa
Position chr8: 21345012-21351209  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0439100
Parent gene annotation Protein of unknown function DUF1336 domain containing protein. (
Os08t0439100-01)
Parent gene strand +
Alternative splicing Os08g0439100_circ_g.1 Os08g0439100_circ_g.2 Os08g0439100_circ_g.3 Os08g0439100_circ_g.4 Os08g0439100_circ_g.5 Os08g0439100_circ_igg.1 Os08g0439100_circ_g.2 Os08g0439100_circ_g.3 Os08g0439100_circ_g.4 Os08g0439100_circ_g.6 Os08g0439100_circ_g.7 Os08g0439100_circ_g.8 Os08g0439100_circ_g.9 Os08g0439100_circ_g.10 Os08g0439100_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0439100-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGGGTTATTGGATGGTAAAACGTGCAGTTGGAACAAAAGCTTGTCTTCTGGGAAAAGCAGTA
ACATGCAATTACCTTCGCCAGGATAACTTTCTAGAGccattttgcagattcctgcttgtcacaa
gaacaaacctccaaggcatggctacgagcgtacaaaaatcaattgtaagattcatctttcatac
tttatttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.10600172
Functional Information
Coding potential Y
Potential coding position 21346065-21346010(+)
21345060-21351184(-)
21345017-21350989(-)
Potential amino acid sequence MLEMSPSFWDRWKRRHNENFDRSIAFALLSQVAGLREYFAANPALTSDLPSTVVKPKQSDSLII
QSELEDSELNDEFYDALARGESFEDEDSDDDDDMIPKAGKVKFKNISWAIAGLAMKPTKASVEK
SELVTNSTPVTIDSNHFHGTLRRAKSENDPNSWSEPGGEKFMIRGKTYLTDYTKVVGGDPLLKL
IAVDWFKADERFDSVALHPKSLVQSEAAKKIPFILVINLQVPAKPNYNLVMYYAAERPVNKDSL
LGRFIDGTDAFRDARFKLIPSIVEGYWMVKRAVGTKACLLGKAVTCNYLRQDNFLEPFCRFLLV
TRTNLQGMATSVQKSIPQHGN*(+)
MPWRFVLVTSRNLQNGSRKLSWRR*(-)
MALESYPGEGNCMLLLFPEDKLLFQLHVLPSNNPQQCLV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017