Detail information of Os03g0231750_circ_ag.3


General Information
CircRNA Name Os03g0231750_circ_ag.3
ID in PlantcircBase osa_circ_018728
Alias Os_ciR9133
Organism Oryza sativa
Position chr3: 6955851-6961582  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0231700_circ_g.3 Os03g0231750_circ_ag.1 Os03g0231750_circ_ag.2 Os03g0231700_circ_g.4 Os03g0231800_circ_g.1 Os03g0231800_circ_g.2 Os03g0231800_circ_g.3 Os03g0231800_circ_g.4
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAAATCATGTATTAACTCTCCTCTTGGTTGTCACTTTCTGTCCCTTTTCTGCTGCATCCAGA
TGACTTGTGGTCACCGGCCACGGCCAGTATGGAGTActttccgagcgtgtaggcgagcgcagat
ccggcgaccccggcaccaacaatgacgatgtccgtccggtcacccccatcgccgccaacaaccc
ggcagcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.499666805
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015