Detail information of Os03g0231800_circ_g.3


General Information
CircRNA Name Os03g0231800_circ_g.3
ID in PlantcircBase osa_circ_018732
Alias NA
Organism Oryza sativa
Position chr3: 6959467-6959715  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0231850
Parent gene annotation Hypothetical protein. (Os03t0231850-00)
Parent gene strand +
Alternative splicing Os03g0231700_circ_g.3 Os03g0231750_circ_ag.1 Os03g0231750_circ_ag.2 Os03g0231750_circ_ag.3 Os03g0231700_circ_g.4 Os03g0231800_circ_g.1 Os03g0231800_circ_g.2 Os03g0231800_circ_g.4
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTAATGAAATGCTCACATCAAACAATACAAGAAAATCATAAAAATAAGTATGTCAAAAATTC
TAGTAAAGATAAATTTGTGTCGAGAAAGACTATTACctcatgtcacatgcaggtgcacgaatta
gatacatccagatacggcgcatgtagaaggaaagaacatgtgaaatacatcattctggacgagt
agcaaaat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 249
Transcript exons: 6959467-6959715
CTCATGTCACATGCAGGTGCACGAATTAGATACATCCAGATACGGCGCATGTAGAAGGAAAGAA
CATGTGAAATACATCATTCTGGACGAGTAGCAAAATAAGCACTTAAACATAATCTAATATTTTA
ATCCTCTAGAGGCAACTAAAATACTAATGAAATGCTCACATCAAACAATACAAGAAAATCATAA
AAATAAGTATGTCAAAAATTCTAGTAAAGATAAATTTGTGTCGAGAAAGACTATTAC

Genomic sequence CTCATGTCACATGCAGGTGCACGAATTAGATACATCCAGATACGGCGCATGTAGAAGGAAAGAA
CATGTGAAATACATCATTCTGGACGAGTAGCAAAATAAGCACTTAAACATAATCTAATATTTTA
ATCCTCTAGAGGCAACTAAAATACTAATGAAATGCTCACATCAAACAATACAAGAAAATCATAA
AAATAAGTATGTCAAAAATTCTAGTAAAGATAAATTTGTGTCGAGAAAGACTATTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.244899264
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017