Detail information of Os03g0231800_circ_g.1


General Information
CircRNA Name Os03g0231800_circ_g.1
ID in PlantcircBase osa_circ_018730
Alias Os_ciR3885
Organism Oryza sativa
Position chr3: 6958237-6959434  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0231850
Parent gene annotation Hypothetical protein. (Os03t0231850-00)
Parent gene strand +
Alternative splicing Os03g0231700_circ_g.3 Os03g0231750_circ_ag.1 Os03g0231750_circ_ag.2 Os03g0231750_circ_ag.3 Os03g0231700_circ_g.4 Os03g0231800_circ_g.2 Os03g0231800_circ_g.3 Os03g0231800_circ_g.4
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0231800-02:4
Os03t0231800-03:4
Os03t0231800-02:4
Os03t0231850-00:4
Os03t0231800-03:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTTTTAATTCTTCACCTGACTTGGTCTTGTATTTAACACCCTTAACTGTACCATCTTCTTCA
ACCAATGATGTAACAGTTCCTTGCTCCAATTGAACAggaaatcagtcttacgccgatccacatg
cgtttaggtgaagggaggggaagcattaggcgaccgacaccatagatagcgacagcaaagaaat
gtgccact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 943
Transcript exons: 6958237-6958515,6958601-6958876,6958968-6959186,6959266-
6959434
GGAAATCAGTCTTACGCCGATCCACATGCGTTTAGGTGAAGGGAGGGGAAGCATTAGGCGACCG
ACACCATAGATAGCGACAGCAAAGAAATGTGCCACTAAACTCAATGGTCGAGGATTCAGACCAG
ACAGAAGAGCAATAGGCCCATTTGAAAAGACACCTCCAAGGCTCAAGTAATCAAAGCAGGCTTG
GCGCATCTCATTCCTAGCCTGATCAGGTGAGGCACTGAAAACCTTGTATAGAGCACCAGCTAAT
GTGTTTATGGTAGAAGCAACCGGCTTCCGCAGTGTATAGAATGATTCAAGGTATTTGCAAAGAG
CAGATGCATCATGCAGATTGCGGAGAGGCTTGAGAAGATTACGTAGCACAACAATGTCAGATAA
TGCAACAGTCATTCCGCCACCAGTCAAAGGATGCCGCATGTTGAATGCATCACCCATCAAAAGT
GCACCAGGGGTTGGATGTGGAGCAGCCGGCATGCTCCTGTTTGGCATTGTTCTTATGCTTCCCT
TATCAATGGCTGCTATGAATGAATCATAGATTTCTGGAGGAATCTGAGGTGCAACCACTGTTTT
GAGATATTTTGCCATTTCACCGTTTGCTATGGAAGGCACCTTCTGACCAGGGACATCAACCAAA
CAGCGAACTTCAGTGCTGCTTATTGGGTAAAATAGGATAGGTGAAGGATTGGCCAGGACAACAT
GGCCATGGTTTGCATGAGGAAGTTGACAATTCTCCAGGACCAGCCCAACAAAACAAGATGGTAC
ATCAACCTTTGGAGAGCAAAGGGCGCGGCGAAGGTTTGAGAAACAGCCATCGCATACAATTGTC
AGAGGTGCATATGCTTTTAATTCTTCACCTGACTTGGTCTTGTATTTAACACCCTTAACTGTAC
CATCTTCTTCAACCAATGATGTAACAGTTCCTTGCTCCAATTGAACA

Genomic sequence GGAAATCAGTCTTACGCCGATCCACATGCGTTTAGGTGAAGGGAGGGGAAGCATTAGGCGACCG
ACACCATAGATAGCGACAGCAAAGAAATGTGCCACTAAACTCAATGGTCGAGGATTCAGACCAG
ACAGAAGAGCAATAGGCCCATTTGAAAAGACACCTCCAAGGCTCAAGTAATCAAAGCAGGCTTG
GCGCATCTCATTCCTAGCCTGATCAGGTGAGGCACTGAAAACCTTGTATAGAGCACCAGCTAAT
GTGTTTATGGTAGAAGCAACCGGCTGTGAACATGAAAGCGCCATACATTAGACAGCATACATTT
TGAAAGGTGGGTGGTAAATTGTGAAATGAAGAGTGAAGACTAACCTTCCGCAGTGTATAGAATG
ATTCAAGGTATTTGCAAAGAGCAGATGCATCATGCAGATTGCGGAGAGGCTTGAGAAGATTACG
TAGCACAACAATGTCAGATAATGCAACAGTCATTCCGCCACCAGTCAAAGGATGCCGCATGTTG
AATGCATCACCCATCAAAAGTGCACCAGGGGTTGGATGTGGAGCAGCCGGCATGCTCCTGTTTG
GCATTGTTCTTATGCTTCCCTTATCAATGGCTGCTATGAATGAATCATAGATTTCTGGAGGAAT
CTGTCAACAGAACATTTCCATTGACATTTAGTTGCTATGAGTAGGCAAGCAAAAACTCGGGACA
AGACTGACTGAAATAGCAAAATAATACCTGAGGTGCAACCACTGTTTTGAGATATTTTGCCATT
TCACCGTTTGCTATGGAAGGCACCTTCTGACCAGGGACATCAACCAAACAGCGAACTTCAGTGC
TGCTTATTGGGTAAAATAGGATAGGTGAAGGATTGGCCAGGACAACATGGCCATGGTTTGCATG
AGGAAGTTGACAATTCTCCAGGACCAGCCCAACAAAACAAGATGGTACATCAACCTAACCACAT
ATTTCCATCAGTATTAGATCTTCTACATGCATGAACAAAAAAGGATAGTGCAAAATCTAAAAAC
TGTACCTTTGGAGAGCAAAGGGCGCGGCGAAGGTTTGAGAAACAGCCATCGCATACAATTGTCA
GAGGTGCATATGCTTTTAATTCTTCACCTGACTTGGTCTTGTATTTAACACCCTTAACTGTACC
ATCTTCTTCAACCAATGATGTAACAGTTCCTTGCTCCAATTGAACA
Conservation Information
Conserved circRNAs NA
PMCS 0.596894157
Functional Information
Coding potential Y
Potential coding position 6959005-6959398(-)
Potential amino acid sequence MAKYLKTVVAPQIPPEIYDSFIAAIDKGSIRTMPNRSMPAAPHPTPGALLMGDAFNMRHPLTGG
GMTVALSDIVVLRNLLKPLRNLHDASALCKYLESFYTLRKPVASTINTLAGALYKVFSASPDQA
RNEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPLPSPKRMWIG
VRLISCSIGARNCYIIG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017