Detail information of Os03g0231750_circ_ag.1


General Information
CircRNA Name Os03g0231750_circ_ag.1
ID in PlantcircBase osa_circ_018726
Alias Os_ciR269
Organism Oryza sativa
Position chr3: 6954998-6959890  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0231700_circ_g.3 Os03g0231750_circ_ag.2 Os03g0231750_circ_ag.3 Os03g0231700_circ_g.4 Os03g0231800_circ_g.1 Os03g0231800_circ_g.2 Os03g0231800_circ_g.3 Os03g0231800_circ_g.4
Support reads 132
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGTGGAACTTCTCCAAGGGATAGGAGAGTTTTGTGTCTTTCCCATCTTTGAATAACGCGTAAC
CAAGGACACGCTGAGCATCTATTTCTTGAACACAATcctcaagacccagctccatcaatttcaa
atagccaccaggctgtagcagttcaccaacaattctatcaggctccgtcatgtcccgctctata
acatgcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAAGACCCAGCTCCATCAATTTCAAATAGCCACCAGGCTGTAGCAGTTCACCAACAATTCT
ATCAGGCTCCGTCATGTCCCGCTCTATAACATGCACTCGTCGCCCATCCTAATTCAACAAACGA
AACCAGGAATATTAGATTTTCTTTTTCAGGATATTTCTGTTTTTACCACAATGCATCGCTTGAT
GGTAACGAGATACATGACTGCATTTTTACTATTGAGTGTTCTGTTGTCGGATAACATGAATGAT
ACTAGTACAATAGAAGTGATTCATTCTACCAAATACAAAAGACACTATGGTATCTCAATGTGTT
TGTATCAATAGCAATTTTGACTCTTCACGTTCTACAAGACATTATTTTCACCGTACAGGTTACT
AAAATTATAGTACGAAAGTATTTTAAGTGAGAAATAGAGTGAAATGGAACTAGTACAGTTCCAT
GGTCAATCTAGGTGGTTTTAAGGAAGATGATGGTAAAACTCTTGATGATTAGAAATTTGCACTA
ATCCTAAAACATAGTATTGTTAAAAAAAACCTGGCGCTTTGGTAATTTTACTCCTAAGTGAAAA
GTGTACATAAACTGCATCTCGTACTGAACATAAGTACATAACACCAGCTATTGTTGGCCCGGTT
TAAAGAAAAAAAACCCAGATGTATTACTTTTAGAAAAAACAAATAAAACATTTTCGTATCAATG
GTGCATTGGTGCGCCACTTACAAGTTGGTGGTAGACTGGTACTAGTAGTAGTTACGAAAGCAAA
ATTCCAGCCTAAAAAGATACGAACGATTCGCCTCAACCAAATGCGAGTACGTCAACAAACGAGT
GAGAGACAAAAATGTAGCCACCTTTCCGAGCGTGTAGGCGAGCGCAGATCCGGCGACCCCGGCA
CCAACAATGACGATGTCCGTCCGGTCACCCCCATCGCCGCCAACAACCCGGCAGCCACCCTCCG
GCGCGACCTCCCGTTGGCGGCGGCGGCGCCGCCACCCCATCTTCACTGCGACGAGGAAGGCCGC
CGTGAGGAGCGTGGCCGCGGCGAGGCCAACGAGCTGCCCGGCGCCGGCGACCGCATCCATTTCT
TGCTGCTCTGCGTGCGTACGTACGTGGGTGGGTGGAAGCTTAGAGAAGTGCAAGCGAGGTGACG
GGAGACTACGTTTTATGGGAGAAGAAGTGAGCTGAAAAAAGGCCGGACCGCCGCTGATTAGCAG
CTGGCAATGGCATCGTCAGCTTTCGCTGGCGTGGCTCGTGTTGGCAGAGCTGGAGCTGCTTTGC
GCAACAGGAGTCAACGTGATTCAGCGAGCAAACGGTAGCCGTCCATCTCGCCCCCGCCACACGA
ATCTCGAGGCCGGAAAACCATGTCCGGCTCCCAGTTTTACAGGCTGTGGCCATTGCATTACCAC
CTCTTCTTCTGCCGCTACAGTCCGAGATCCCCAGGCACGGATCTTGGCGCTTAATGAAGTGATA
ATTTTTACTGGTTATTAGTAGGTGGCAGTCTGGCAGACATGCCCCTTGGCCCTTGCCATATGAC
TACTACTTGCAGGAATTGTTCGTCGGATGAAAGAATGCCATGAATATCATAGATACCATGGCTT
TATTTAGTGCTGTGGACCAAGCAACTTTGCATAAAAGAAACAGTAGCAGACAGAACAGACAGGA
GGAGCAAAGACTGGCAATCGCCGTCGCCGGAAGCCAAACAGAAGATGAAAATATTAAATGGTAC
AGATCGCAGATCGTGGGCCTCTTGGCATGTTGGACCATAGCCATTCACAGTGCTCCGACGTGTC
ATTCGGCCATCGCTCGACACGTCGGAGATTCGCAGCCAGCTAGGCGTCACGCGCGACCAAACCA
AGTCCGCGGAGCATACTTTGGCCACCCGTTCTTCTGCAACTATCTGACAACTCGAGGGCGCGCG
GCGTGGGGGAGAACGGCGCGGCCGCGTTGTGGAGGTCGTGGCCTCGCCCTTCCTCCCACGACCC
CCTTCGCGGGGAGCTCGAGCAGGAGCCCAGCGGCGGCGGCGCAGCCATGGAGGTAGTCTTACCA
GGTAAACCGGCGAATGACGGCGATGACGACCACGACTTCACCCATCCCGATCTGCGCCCCCTTC
GGGAGTTCGCCGGCCGTCTCGATCCGTGGCGCCGGGAGCTCGCCGGCAGTCTCGATCCGTGTCG
CTGTGAGCTCGCCGGCCGCCTCGATCTCACCCATCCCCATCTCTACGTCCTCCGGGATCTCGTC
GGCCCTGTCCCACCTCGATTTGCGCCGCCTGGAGGAGGAGGAGGAGGAGGAGAGGAAGCAGCAG
TAGCACGGGATCGATCTGAAGAAGCGGCGGAGGAGAAGGAGCAGCGGCACGGGAGAGAGAAGGA
GCAGCGCACGTACGGGAGATTGATCGATTTGCTCGGGGAGAGAGATGGGTGGGGAAAGGTATTC
CCGTGGTGGGCCCAGCGTGAGAAAAAAAAATCTGTTATGGACCCCACCCAAAGCTACACGCACT
GGGGAGACAGGAGCTTCGTCTGTTTTTTGCCTATGTGGAGGCTGGGCTTCTCGCTGAGACGGTG
GCGCATTGCTAATGCCCTAATGATGTTGTTTACTAGCAAACACAGTTGTATCAATCAATCACAC
ACAGGAGTCCTACCCAATGGAATTCAGTGGATTAGCAACGCACCCAGTTAGAGCAAAGACGCAA
TCATGATGAATTCATGGGGGATATACAGCTTAAGGATTAGCAGTCGACATGCATCCCTGACGGA
ACAACGAAAGTGGCAAGTGTACAGGGAATGTGACGGTGTATACAGGTCCCCTCGTTCCATTAGA
ACAACAGCACACACAACCTCACGGCCTGACGACTACTACCAATTACACAGGAAAATTGCCATCC
ACGAAAAACATCCGCCGATCAGGACAGTGGCAGGGATTTTCTCTTCGCTTCTCCTTTCATTTTC
CCCCCTTACTCCATTGGACGAGGAGCACGATAATAGGCAGGGACAGTGGCGGGGAAGAACATAT
GCCTCACACCTTCAGCTTTGATGATGGGGAAAATTATACCACATGCACTCTGCAGTGAAAACTC
TGGATTAGCAATAGTATAGAAACGGGAAAAAAAAGTCTATTTAGGGTTTAGCGTTTAGGGTTTA
GGATAGGGAATGAAAAAATTGTATAGAAAACTGTCCATGAATGGTACCACGATGGAAATAGTAA
AGTTTGAAAACTTTGAAGAATAAGATTTGAGATACTCACGGAAATCAGTCTTACGCCGATCCAC
ATGCGTTTAGGTGAAGGGAGGGGAAGCATTAGGCGACCGACACCATAGATAGCGACAGCAAAGA
AATGTGCCACTAAACTCAATGGTCGAGGATTCAGACCAGACAGAAGAGCAATAGGCCCATTTGA
AAAGACACCTCCAAGGCTCAAGTAATCAAAGCAGGCTTGGCGCATCTCATTCCTAGCCTGATCA
GGTGAGGCACTGAAAACCTTGTATAGAGCACCAGCTAATGTGTTTATGGTAGAAGCAACCGGCT
GTGAACATGAAAGCGCCATACATTAGACAGCATACATTTTGAAAGGTGGGTGGTAAATTGTGAA
ATGAAGAGTGAAGACTAACCTTCCGCAGTGTATAGAATGATTCAAGGTATTTGCAAAGAGCAGA
TGCATCATGCAGATTGCGGAGAGGCTTGAGAAGATTACGTAGCACAACAATGTCAGATAATGCA
ACAGTCATTCCGCCACCAGTCAAAGGATGCCGCATGTTGAATGCATCACCCATCAAAAGTGCAC
CAGGGGTTGGATGTGGAGCAGCCGGCATGCTCCTGTTTGGCATTGTTCTTATGCTTCCCTTATC
AATGGCTGCTATGAATGAATCATAGATTTCTGGAGGAATCTGTCAACAGAACATTTCCATTGAC
ATTTAGTTGCTATGAGTAGGCAAGCAAAAACTCGGGACAAGACTGACTGAAATAGCAAAATAAT
ACCTGAGGTGCAACCACTGTTTTGAGATATTTTGCCATTTCACCGTTTGCTATGGAAGGCACCT
TCTGACCAGGGACATCAACCAAACAGCGAACTTCAGTGCTGCTTATTGGGTAAAATAGGATAGG
TGAAGGATTGGCCAGGACAACATGGCCATGGTTTGCATGAGGAAGTTGACAATTCTCCAGGACC
AGCCCAACAAAACAAGATGGTACATCAACCTAACCACATATTTCCATCAGTATTAGATCTTCTA
CATGCATGAACAAAAAAGGATAGTGCAAAATCTAAAAACTGTACCTTTGGAGAGCAAAGGGCGC
GGCGAAGGTTTGAGAAACAGCCATCGCATACAATTGTCAGAGGTGCATATGCTTTTAATTCTTC
ACCTGACTTGGTCTTGTATTTAACACCCTTAACTGTACCATCTTCTTCAACCAATGATGTAACA
GTTCCTTGCTCCAATTGAACACTGAAATATAAAACATAATGCCAAACATTTACCTCATGTCACA
TGCAGGTGCACGAATTAGATACATCCAGATACGGCGCATGTAGAAGGAAAGAACATGTGAAATA
CATCATTCTGGACGAGTAGCAAAATAAGCACTTAAACATAATCTAATATTTTAATCCTCTAGAG
GCAACTAAAATACTAATGAAATGCTCACATCAAACAATACAAGAAAATCATAAAAATAAGTATG
TCAAAAATTCTAGTAAAGATAAATTTGTGTCGAGAAAGACTATTACTTAGGCAAAGATGCAGCT
TTCTGGCGCATCCTCTGTATAAACCGTCCATTGTGAAAGCTCCTACCAGCAACATCTGAGTGGA
ACTTCTCCAAGGGATAGGAGAGTTTTGTGTCTTTCCCATCTTTGAATAACGCGTAACCAAGGAC
ACGCTGAGCATCTATTTCTTGAACACAAT
Conservation Information
Conserved circRNAs osi_circ_004660*
PMCS 0.638651317
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015