Detail information of Os05g0594700_circ_g.8


General Information
CircRNA Name Os05g0594700_circ_g.8
ID in PlantcircBase osa_circ_029226
Alias Os_ciR10180
Organism Oryza sativa
Position chr5: 29611423-29615964  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os05g0594700
Parent gene annotation Similar to Hv711N16.16 (Fragment). (Os05t0594700-01);Similar to
Hv711N16.16 (Fragment). (Os05t0594700-02)
Parent gene strand +
Alternative splicing Os05g0594700_circ_g.3 Os05g0594700_circ_g.4 Os05g0594700_circ_g.5 Os05g0594700_circ_g.6 Os05g0594700_circ_g.7 Os05g0594700_circ_g.9
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os05t0594700-02:8
Os05t0594700-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAGGAGGACAATATGTCAATATCCGAGGATGTCGGGATGGAGGAGGTGATCGTGCCGACCAA
GCGTCAATCTCGCCGGAACACTCCCGCCCAGAGCAAgttcttgtgcggaatatacctccagatc
ctgatgaatcaattagtgagctcgtggagcatttcttccttgttaatcatcctgatcattatct
aagacacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTCT
TCCTTGTTAATCATCCTGATCATTATCTAAGACACCAGGTAATCTTTGGTAAAAATTTGTGGAT
AACTAAGTCAGATGTAGTTCTGTTGCTTTTCTCTTCTGGGGGTTTCAACAGGTCATCATCTGCT
TAGGTAGGAGCTGTGTTTCTAGTTATGCTGATTGGCCTAATGCAAATAGATTTTTTTTCTACTC
AACAGAACCCCCTTCATATATTATCCTTTTCCCACAAATTATTGATGGTTTCAAATGAACCTAA
TATTAATGTTTGCTAGTTTCATGTTGAGATTTTTTCCCCCAGATTCTGAGAATAGTCCACATAA
TAGCCTACCCACAGATTATTTGGATATTAATACATAAATATTTTGGTTTTGCCAAGTAACAGGA
AAGTTATGATCTCTTGGTTATCTAGATTTTCATTTAAATAATCATATTCATATGTTAAAGGGTC
TAAAAACTGTCTCTCTGTGCTAACACTTCACAGTGCTAATTGCTGAATGAGATTTAGAAGGGTC
ATATCCAAATTTGTGTATCATATGCACTTGGGTTTTCTACCCTGACTTCATTGATTTTTTTATT
CTTCCTTATACTAATTACTGTATTTATTCCGTCCTTTTTCTGGCCGATTGTCTATATCTATAGG
TGGTTTACAATGCAAATAAACTTGCTGATCTGGTTGAGAAGAAGAAGAAACTGCAAAATTGGCT
TGATTACTACCAGCTCAAGTATGAAAGAAATCCATCAAAAAGGCCCACCACTAAGGTTAGTCTG
CCATATGGACCTTGATCAATTTATTTTTCATTTCAATTATAATATTACATTAGGATCTTTTTTC
TTTTTAATTCTCTGTCCCCCTGTTGGATTTTTGTTCCAGACTGGCTTTCTTGGCTGTTTTGGTT
CCGAGGTGGATGCCATTGAATACTACAAAGCAGAGATTGAGAAGATTGGGAAAGAAGTAAGTTG
TACTCCCTCCGTACCGTAATATAAGGGATTTTGACTTTTTGCTTGCACTGTTTGACCACTCGTC
TTATTCAAAAAATTTGTGCAAATATAAAAAACGAAAAGTTGTGCTTAAAGTACTTTGGATAATA
AAGCAAGTCACAAATAAAATAAATAATAATTCCAATTTTTTTTTAATAAGACGAGTGGCATTTT
TGTCTATTAATTCCAAATAAATAATAATCCCTTATATTACGGGACGGAGGGAGTAGTATTTTTG
TCTATATAATCATTGGACCATTCGGCATTGTCCATTTTTTCTGATTGAGTTGTATCATTCTATG
AACATGGGTTTGCACAATCGATTCTTTTTTAGGATTAGTATTATGTCTAAGCATCACACATTCA
CACCTTGTGGGAGTTTAATTTGTTTACAGCTAACAGTCAGATAACAATAAATTCATGTGTAACA
ACATGCAGGAAGCTGATGAGCGTCAAAAGATCATGAAGGATCCCCAGTCAGCTGTTCCAGCAGC
CTTTGTTTCATTTCGTTCACGGTGGGGGGCTGCTGTTTGTGCTCAGACACAGCAAACCAGTAAT
CCAACAGTCTGGATAACTGAATGGGCTCCAGAACCTCGTGATGTCTACTGGAATAATCTATCCA
TTCCATTTGTGTCCCTCACAGTTAGGAGGCTGATAGTTGCTGTGGCATTCTTCTTCCTCAACTT
TTTTTATGTCATTCCAATAGCATTCGTGCAATCTCTTGCAAGCCTTGAAGGAATAGAAAAGGCG
CTTCCATTTCTGAAACCCTTAATCAAAATGTAAGTGTTTCTTCATGTGTTGATTATTTATACTA
TTATTGCATTTCCATGATTTATTCAGCGTGTAATTAATTTGGGTACATTAGACATATGGTTATC
TTCTGCTATTCTTTTGAAATGCCCTGATAAATCTTGTTGACTATTGTGCAGTGATGTCATCAAA
TCATTCATCCAAGGTTTTCTTCCAGGAATTGCTTTGAAGGTCTTCCTTATATTGCTTCCAACTA
TACTGATGTTTATGTCTAAGTTTGAAGGATTAATATCACAGTCATCACTGGAGCGAAGATCTGC
ATCTAAATATTATATCTTCTTGTTCTTCAATGTATTTTTGGGAAGCATCGTTACAGGATCTGCT
TTAGATCAGCTTAAGGCATACATTCATCAGTCGGCAAATGAGTAAGTACTCCTATGCCGCCAAC
TCTACCGACTTGAAAGTTTAGAGATTATATACATGCTTGGTTGTTCATTTGAGTCTTCCCATCT
TTTAATAGGATGCAGTTTATTTTTCCTGCTTCGCGGATCTCTGTTTGTTGACAATTGTATTTTT
AGCAATTAATTATGGGAGAACACAGAAAAATCTGGTTCTTGTCGGAGATCACTTTGTTCATGCC
GGCTGTCAAATAGATACCAAGTTCTTAATTCTGTTTTGATTAGTACTGTGGATTATATATTCAG
GAGCTACACTTTGTTTGAATATTTAGACACATAGGCTAAATCAAATATGAAAAAATGGGACCAA
TCTAGGAAGGACTAGATTGATTTTGAATTAAGGAGGGGGTGAGGCTCGAACCCGGACCGGCTAG
CTCGCAGCTTGCGTTGCTAGCCGGGAAGGCCCCGGGCCTTTCTCCTTAATCAAATATGTCAAGC
AGTGAATTATGATATACATTCTTATTAAATAAAACATGTGCTGGTGGTTCAAATAACATCATGA
ACTCGTGATATATTGGTTCTTAAGCTATCTTAGAAATAGATAAATTCTTTTGGTTACAGTGAGT
TAGACATAAATAGCAACATAATGATGCTTAATAGGCAAAAGGGGGGCCATTTGTTGATAGGCTA
ACTCTGTAGATGCAGAGATTTTGGCATCAAGGCAAACGCCAAAGCATGGGCCTCAGATACTTAC
CTCGTGGAAACTCAGATCGTATTTATGCTTTCACGTACCGATATTTATGTCCTGCTATTTGTCT
GTTTATTTTACAACTCATTCTTCACATTCTCTGATTGAAACCAAATGATCATTACAATTTGCAG
CAAGTCTAAATTAGTTCTTTTGCAGAATACCGAGAACCATCGGTGTAGCCATTCCAATGAGGGC
GACTTTTTTCATAACATATGTAATGGTTGACGGTTGGACTGGTGTAGCTGGTGAAATATTGAGA
TTGAGGGCACTTATAATCTTCCATTTGAAAAACTTTTTCTTGGTGAAGACTGAAAAGGACAGAG
AAGAGGCAATGGATCCTGGTAGTATCTGTTTTGATTGGTGTGAACCACGTATACAGCTATATTT
CTTACTTGGCCTTGTCTATGCTGTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTC
GGGCTGGCATATGTTGTCTACCGCCACCAGGTAAGGACCACTGCAGCTACTTGCGAGAATTTTA
TTGTGTTAAGTTTTAAGTGATTATGATGAACTACTAAATTAGCTTGCTTTGTATGACTATTTAG
ACCATTTTTCCCTGGTTTATTGGAAATAAACTTCATTACTGATCGGCACAAACAGTTTCCACTC
ATGATCAGTGTTGCTATGCTGTTGTGCATGTGTTAAGGGTATGTAATAATGGCTAAGATTTACT
AAGAATATGTGCTTGGATATATTGTTTTGAGTTCGCCAACACAAGGGAGTATGCTATTGTGATA
GATGGACAGTTATGCTAGCTAAAAGTTACATGCAATAAATCTATCAGAATGGTCATGCAACTAA
GGGGCTGTTCAGCTGCCTGGGATGTGCAAGAACAGTTCCCCAAGCACGAAAATAGCAGCGGGCA
GCAGCTTGGCCTGCCGAACAGCCCGCTAAGATACTTCCATTATCATCAACTGCAAAGCAATTTA
TATGAAACTGCAGTGATGCAATTAATCTACATATGATTCCTAATTTTGCGATATTAATTTTATG
ATTTAGTTGTGTATATAGTGTTTTGGTATGCTTACTTGGTTGCACATTTCTTTGAAGATAATAA
ATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCGAGTGTGCACGGGCGCATAAT
CATTGCATTGATCGTATCACAGCTACTTCTTATTGGACTGTTGAGTACAAAAGGTTTCGAGGAG
ACGACACCAGTTCTTGTTGTTCTTCCTGTGTTGACGTTTTGGTTTTACAAGTACTGCAAGAACC
GGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGGTAATGTGTGACAGGAAGTTTTGTATACT
GAAATGTTTGTTTTGGTTTGGTGGTAAGAGTGAAATTTGTTGGATGTGCAGGAAGCGATGAGGA
AAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATCTGAAAGCGTACCTGGCCAATGCGTA
CCTGCACCCGGTGTTCAAAGGCAGGGAGGAGGAGGACAATATGTCAATATCCGAGGATGTCGGG
ATGGAGGAGGTGATCGTGCCGACCAAGCGTCAATCTCGCCGGAACACTCCCGCCCAGAGCAA
Conservation Information
Conserved circRNAs osi_circ_015874 osi_circ_015875
PMCS 0.242728033
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015