Detail information of BGIOSGA020484_circ_g.6


General Information
CircRNA Name BGIOSGA020484_circ_g.6
ID in PlantcircBase osi_circ_015874
Alias Chr05:30560036_30564577(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 30952047-30956589  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA020484
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA020484_circ_g.1 BGIOSGA020484_circ_g.2 BGIOSGA020484_circ_g.3 BGIOSGA020484_circ_g.4 BGIOSGA020484_circ_g.5 BGIOSGA020484_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-TA
Number of exons covered BGIOSGA020484-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAGGAGGACAATATGTCAATATCCGAGGATGTCGGGATGGAGGAGGTGATCGTGCCGACCAA
GCGTCAATCTCGCCGGAACACTCCCGCCCAGAGCAAggttcttgtgcggaatatacctccagat
cctgatgaatcaattagtgagctcgtggagcatttcttccttgttaatcatcctgatcattatc
taagacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTC
TTCCTTGTTAATCATCCTGATCATTATCTAAGACACCAGGTAATCTTTGGTAAAAATTTGTGGA
TAACTAAGTCAGATGTAGTTCTGTTGCTTTTCTCTTCTGGGGGTTTCAACAGGTCATCATCTGC
TTAGGTAGGAGCTGTGTTTCTAGTTATGCTGATTGGCCTAATGCAAATAGATTTTTTTTCTACT
CAACAGAACCCCCTTCATATATTATCCTTTTCCCACAAATTATTGATGGTTTCAAATGAACCTA
ATATTAATGTTTGCTAGTTTCATGTTGAGATTTTTTCCCCCAGATTCTGAGAATAGTCCACATA
ATAGCCTACCCACAGATTATTTGGATATTAATACATAAATATTTTGGTTTTGCCAAGTAACAGG
AAAGTTATGATCTCTTGGTTATCTAGATTTTCATTTAAATAATCATATTCATATGTTAAAGGGT
CTAAAAACTGTCTCTCTGTGCTAACACTTCACAGTGCTAATTGCTGAATGAGATTTAGAAGGGT
CATATCCAAATTTGTGTATCATATGCACTTGGGTTTTCTACCCTGACTTCATTGATTTTTTTAT
TCTTCCTTATACTAATTACTGTATTTATTCCGTCCTTTTTCTGGCCGATTGTCTATATCTATAG
GTGGTTTACAATGCAAATAAACTTGCTGATCTGGTTGAGAAGAAGAAGAAACTGCAAAATTGGC
TTGATTACTACCAGCTCAAGTATGAAAGAAATCCATCAAAAAGGCCCACCACTAAGGTTAGTCT
GCCATATGGACCTTGATCAATTTATTTTTCATTTCAATTATAATATTACATTAGGATCTTTTTT
CTTTTTAATTCTCTGTCCCCCTGTTGGATTTTTGTTCCAGACTGGCTTTCTTGGCTGTTTTGGT
TCCGAGGTGGATGCCATTGAATACTACAAAGCAGAGATTGAGAAGATTGGGAAAGAAGTAAGTT
GTACTCCCTCCGTACCGTAATATAAGGGATTTTGACTTTTTGCTTGCACTGTTTGACCACTCGT
CTTATTCAAAAAATTTGTGCAAATATAAAAAACGAAAAGTTGTGCTTAAAGTACTTTGGATAAT
AAAGCAAGTCACAAATAAAATAAATAATAATTCCAATTTTTTTTTAATAAGACGAGTGGCATTT
TTGTCTATTAATTCCAAATAAATAATAATCCCTTATATTACGGGACGGAGGGAGTAGTATTTTT
GTCTATATAATCATTGGACCATTCGGCATTGTCCATTTTTTCTGATTGAGTTGTATCATTCTAT
GAACATGGGTTTGCACAATCGATTCTTTTTTAGGATTAGTATTATGTCTAAGCATCACACATTC
ACACCTTGTGGGAGTTTAATTTGTTTACAGCTAACAGTCAGATAACAATAAATTCATGTGTAAC
AACATGCAGGAAGCTGATGAGCGTCAAAAGATCATGAAGGATCCCCAGTCAGCTGTTCCAGCAG
CCTTTGTTTCATTTCGTTCACGGTGGGGGGCTGCTGTTTGTGCTCAGACACAGCAAACCAGTAA
TCCAACAGTCTGGATAACTGAATGGGCTCCAGAACCTCGTGATGTCTACTGGAATAATCTATCC
ATTCCATTTGTGTCCCTCACAGTTAGGAGGCTGATAGTTGCTGTGGCATTCTTCTTCCTCAACT
TTTTTTATGTCATTCCAATAGCATTCGTGCAATCTCTTGCAAGCCTTGAAGGAATAGAAAAGGC
GCTTCCATTTCTGAAACCCTTAATCAAAATGTAAGTGTTTCTTCATGTGTTGATTATTTATACT
ATTATTGCATTTCCATGATTTATTCAGCGTGTAATTAATTTGGGTACATTAGACATATGGTTAT
CTTCTGCTATTCTTTTGAAATGCCCTGATAAATCTTGTTGACTATTGTGCAGTGATGTCATCAA
ATCATTCATCCAAGGTTTTCTTCCAGGAATTGCTTTGAAGGTCTTCCTTATATTGCTTCCAACT
ATACTGATGTTTATGTCTAAGTTTGAAGGATTAATATCACAGTCATCACTGGAGCGAAGATCTG
CATCTAAATATTATATCTTCTTGTTCTTCAATGTATTTTTGGGAAGCATCGTTACAGGATCTGC
TTTAGATCAGCTTAAGGCATACATTCATCAGTCGGCAAATGAGTAAGTACTCCTATGCCGCCAA
CTCTACCGACTTGAAAGTTTAGAGATTATATACATGCTTGGTTGTTCATTTGAGTCTTCCCATC
TTTTAATAGGATGCAGTTTATTTTTCCTGCTTCGCGGATCTCTGTTTGTTGACAATTGTATTTT
TAGCAATTAATTATGGGAGAACACAGAAAAATCTGGTTCTTGTCGGAGATCACTTTGTTCATGC
CGGCTGTCAAATAGATACCAAGTTCTTAATTCTGTTTTGATTAGTACTGTGGATTATATATTCA
GGAGCTACACTTTGTTTGAATATTTAGACACATAGGCTAAATCAAATATGAAAAAATGGGACCA
ATCTAGGAAGGACTAGATTGATTTTGAATTAAGGAGGGGGTGAGGCTCGAACCCGGACCGGCTA
GCTCGCAGCTTGCGTTGCTAGCCGGGAAGGCCCCGGGCCTTTCTCCTTAATCAAATATGTCAAG
CAGTGAATTATGATATACATTCTTATTAAATAAAACATGTGCTGGTGGTTCAAATAACATCATG
AACTCGTGATATATTGGTTCTTAAGCTATCTTAGAAATAGATAAATTCTTTTGGTTACAGTGAG
TTAGACATAAATAGCAACATAATGATGCTTAATAGGCAAAAGGGGGGCCATTTGTTGATAGGCT
AACTCTGTAGATGCAGAGATTTTGGCATCAAGGCAAACGCCAAAGCATGGGCCTCAGATACTTA
CCTCGTGGAAACTCAGATCGTATTTATGCTTTCACGTACCGATATTTATGTCCTGCTATTTGTC
TGTTTATTTTACAACTCATTCTTCACATTCTCTGATTGAAACCAAATGATCATTACAATTTGCA
GCAAGTCTAAATTAGTTCTTTTGCAGAATACCGAGAACCATCGGTGTAGCCATTCCAATGAGGG
CGACTTTTTTCATAACATATGTAATGGTTGACGGTTGGACTGGTGTAGCTGGTGAAATATTGAG
ATTGAGGGCACTTATAATCTTCCATTTGAAAAACTTTTTCTTGGTGAAGACTGAAAAGGACAGA
GAAGAGGCAATGGATCCTGGTAGTATCTGTTTTGATTGGTGTGAACCACGTATACAGCTATATT
TCTTACTTGGCCTTGTCTATGCTGTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTT
CGGGCTGGCATATGTTGTCTACCGCCACCAGGTAAGGACCACTGCAGCTACTTGCGAGAATTTT
ATTGTGTTAAGTTTTAAGTGATTATGATGAACTACTAAATTAGCTTGCTTTGTATGACTATTTA
GACCATTTTTCCCTGGTTTATTGGAAATAAACTTCATTACTGATCGGCACAAACAGTTTCCACT
CATGATCAGTGTTGCTATGCTGTTGTGCATGTGTTAAGGGTATGTAATAATGGCTAAGATTTAC
TAAGAATATGTGCTTGGATATATTGTTTTGAGTTCGCCAACACAAGGGAGTATGCTATTGTGAT
AGATGGACAGTTATGCTAGCTAAAAGTTACATGCAATAAATCTATCAGAATGGTCATGCAACTA
AGGGGCTGTTCAGCTGCCTGGGATGTGCAAGAACAGTTCCCCAAGCACGAAAATAGCAGCGGGC
AGCAGCTTGGCCTGCCGAACAGCCCGCTAAGATACTTCCATTATCATCAACTGCAAAGCAATTT
ATATGAAACTGCAGTGATGCAATTAATCTACATATGATTCCTAATTTTGCGATATTAATTTTAT
GATTTAGTTGTGTATATAGTGTTTTGGTATGCTTACTTGGTTGCACATTTCTTTGAAGATAATA
AATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCGAGTGTGCACGGGCGCATAA
TCATTGCATTGATCGTATCACAGCTACTTCTTATTGGACTGTTGAGTACAAAAGGTTTCGAGGA
GACGACACCAGTTCTTGTTGTTCTTCCTGTGTTGACGTTTTGGTTTTACAAGTACTGCAAGAAC
CGGTTTGAGCCTGCATTTGTGAGGAACCCACTACAGGTAATGTGTGACAGGAAGTTTTGTATAC
TGAAATGTTTGTTTTGGTTTGGTGGTAAGAGTGAAATTTGTTGGATGTGCAGGAAGCGATGAGG
AAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATCTGAAAGCGTACCTGGCCAATGCGT
ACCTGCACCCGGTGTTCAAAGGCAGGGAGGAGGAGGACAATATGTCAATATCCGAGGATGTCGG
GATGGAGGAGGTGATCGTGCCGACCAAGCGTCAATCTCGCCGGAACACTCCCGCCCAGAGCAA
Conservation Information
Conserved circRNAs osa_circ_029226
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021