Detail information of Os11g0657100_circ_g.4


General Information
CircRNA Name Os11g0657100_circ_g.4
ID in PlantcircBase osa_circ_009909
Alias NA
Organism Oryza sativa
Position chr11: 26308353-26309422  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0657100
Parent gene annotation Peptide chain release factor 1 family protein. (Os11t0657100-01)
Parent gene strand +
Alternative splicing Os11g0657100_circ_g.1 Os11g0657100_circ_g.2 Os11g0657100_circ_g.3 Os11g0657100_circ_g.5
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0657100-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTATTTTATGTCTGATATATCTCTCGCATAAACATTACAGTTACGAGATAAAATTACGGGAG
CAGCAGGAATCTATAAGAAACCAGAGGAAACTGCAGgtgcgtatgtatcaaaaatactgtgagc
gcaactcctggaagttcaaaccagtttccagctcagaagtatgcttttgcatcctggaccttaa
ccttaacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCGTATGTATCAAAAATACTGTGAGCGCAACTCCTGGAAGTTCAAACCAGTTTCCAGCTCAG
AAGTATGCTTTTGCATCCTGGACCTTAACCTTAACCTGAGGCTTAAATAACAACATGCTGCTCA
CTAGTCGAATCTTTTAGGCAGAAAAGGGTGGGTTCAAGACATATGTGATGGAGGTGAAGGGCAA
ACAAGTCTACAGTAAACTGAAGTTTGAGTCAGGTGTACACCGTGTTCAGCGCGTTCCTCAGACA
GAGACTATGGGCCGTGTTCACACATCAACAGCAACTGTAGCTATTATGCCAGAGGTGAGCTATT
AGATGTCAGTTTTTTTTTTTTGTCAATATCTTTTCTTTCTTTGGAAGCTTTTTGATATTGTTTT
GATGGCATCACAGGCTGATGAAGTTGATGTGGTTATCGATCCGAAAGATATTGAACTCAAAACT
GCAAGATCTGGTGGAGCTGGAGGTAATATCACTTACTATTGTTCTAACAAGAGTACTGTATTCT
TTTTCTCTGAATGTCTTGTAACAGCCGAGTCTAACCTCAAATGTCCTCCAAAATATCACTTGTT
GCAGGGCAGAATGTTAACAAGGTGGAAACTGCTGTTGATCTTATTCACAAACCTACGGGAATTC
GGATATTCTGTACAGAAGAAAGGTCACAACTCCAAAATAGAGAACGCGCATTCCAATTGTTGAG
AGCAAAGCTGTAAGTTTCTATTTTTTAGTTTCTATTGTTATTTTGTAGCCTTCAAAACTTTGTT
TTTCTATTTTCCATAATCTATATGCAGCCTGTCATTTCAGTATTCTGCCCATAAACATGTTCTT
TATAAGCCCATCGTTGCGTTGTTGGTTCTAGCTATCTGGAAAGAAATGCTAAATACAGTAAACT
TATATTTGGTCTCCAGGCTTGTTGGTATTTAGATGATAGATTGTAGTTTAATAGCAGCAGGTAT
CCTTGTGAACCCTTATTTTATGTCTGATATATCTCTCGCATAAACATTACAGTTACGAGATAAA
ATTACGGGAGCAGCAGGAATCTATAAGAAACCAGAGGAAACTGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.211537391
Functional Information
Coding potential Y
Potential coding position 26308360-26309419(+)
Potential amino acid sequence MYQKYCERNSWKFKPVSSSEAEKGGFKTYVMEVKGKQVYSKLKFESGVHRVQRVPQTETMGRVH
TSTATVAIMPEADEVDVVIDPKDIELKTARSGGAGGQNVNKVETAVDLIHKPTGIRIFCTEERS
QLQNRERAFQLLRAKLYEIKLREQQESIRNQRKLQVRMYQKYCERNSWKFKPVSSSEAEKGGFK
TYVMEVKGKQVYSKLKFESGVHRVQRVPQTETMGRVHTSTATVAIMPEADEVDVVIDPKDIELK
TARSGGAGGQNVNKVETAVDLIHKPTGIRIFCTEERSQLQNRERAFQLLRAKLYEIKLREQQES
IRNQRKLQVRMYQKYCERNSWKFKPVSSSEAEKGGFKTYVMEVKGKQVYSKLKFESGVHRVQRV
PQTETMGRVHTSTATVAIMPEADEVDVVIDPKDIELKTARSGGAGGQNVNKVETAVDLIHKPTG
IRIFCTEERSQLQNRERAFQLLRAKLYEIKLREQQESIRNQRKLQVRMYQKYCERNSWKFKPVS
SSEAEKGGFKTYVMEVKGKQVYSKLKFESGVHRVQRVPQTETMGRVHTSTATVAIMPEADEVDV
VIDPKDIELKTARSGGAGGQNVNKVETAVDLIHKPTGIRIFCTEERSQLQNRERAFQLLRAKLY
EIKLREQQESIRNQRKLQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017