Detail information of Os11g0657100_circ_g.3


General Information
CircRNA Name Os11g0657100_circ_g.3
ID in PlantcircBase osa_circ_009908
Alias NA
Organism Oryza sativa
Position chr11: 26306935-26307210  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os11g0657100
Parent gene annotation Peptide chain release factor 1 family protein. (Os11t0657100-01)
Parent gene strand +
Alternative splicing Os11g0657100_circ_g.1 Os11g0657100_circ_g.2 Os11g0657100_circ_g.4 Os11g0657100_circ_g.5
Support reads 3
Tissues shoot
Exon boundary   No-Yes
Splicing signals   GT-AT
Number of exons covered Os11t0657100-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAAAAGAGAATGAAGATGACCCAGATATGGCAGAGATGATTGATTCAGAGATGGAGTCTCTA
TCTAACCAGCTTGAAGAGCTTGAGGAAAAACTGAAGtcaggttgtgagtacgtacaggcagttt
aaggactgtgagaagcaaattgaagaaacaaaaggttagcatgctatagtgcttcttcttttta
gaactatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCAGGTTGTGAGTACGTACAGGCAGTTTAAGGACTGTGAGAAGCAAATTGAAGAAACAAAAGGT
TAGCATGCTATAGTGCTTCTTCTTTTTAGAACTATGCATAGTGTTTCTTATGCCACCCTGGGAT
TAAGTGCTAGATTCTCACAAACTGTGTATGTGCTGATATGATAGTTTTGCAAAAAGAGAATGAA
GATGACCCAGATATGGCAGAGATGATTGATTCAGAGATGGAGTCTCTATCTAACCAGCTTGAAG
AGCTTGAGGAAAAACTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.140397162
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017