Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os11g0657100_circ_g.1 |
ID in PlantcircBase | osa_circ_009906 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 26306741-26307210 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0657100 |
Parent gene annotation |
Peptide chain release factor 1 family protein. (Os11t0657100-01) |
Parent gene strand | + |
Alternative splicing | Os11g0657100_circ_g.2 Os11g0657100_circ_g.3 Os11g0657100_circ_g.4 Os11g0657100_circ_g.5 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0657100-01:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.123935355 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
26307140-26307207(+) |
Potential amino acid sequence |
MAEMIDSEMESLSNQLEELEEKLKVRLADPDIVSDPSEYQKLAQSVAELDQVVSTYRQFKDCEK QIEETKVLQKENEDDPDMAEMIDSEMESLSNQLEELEEKLKVRLADPDIVSDPSEYQKLAQSVA ELDQVVSTYRQFKDCEKQIEETKVLQKENEDDPDMAEMIDSEMESLSNQLEELEEKLKVRLADP DIVSDPSEYQKLAQSVAELDQVVSTYRQFKDCEKQIEETKVLQKENEDDPDMAEMIDSEMESLS NQLEELEEKLK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |