Detail information of Os11g0657100_circ_g.1


General Information
CircRNA Name Os11g0657100_circ_g.1
ID in PlantcircBase osa_circ_009906
Alias NA
Organism Oryza sativa
Position chr11: 26306741-26307210  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0657100
Parent gene annotation Peptide chain release factor 1 family protein. (Os11t0657100-01)
Parent gene strand +
Alternative splicing Os11g0657100_circ_g.2 Os11g0657100_circ_g.3 Os11g0657100_circ_g.4 Os11g0657100_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0657100-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAAAAGAGAATGAAGATGACCCAGATATGGCAGAGATGATTGATTCAGAGATGGAGTCTCTA
TCTAACCAGCTTGAAGAGCTTGAGGAAAAACTGAAGgttagattggctgatcctgatatagttt
cggatcccagcgagtaccaaaaacttgcacaatcagttgctgaactagatcaggtatctgacat
aattccag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTAGATTGGCTGATCCTGATATAGTTTCGGATCCCAGCGAGTACCAAAAACTTGCACAATCAG
TTGCTGAACTAGATCAGGTATCTGACATAATTCCAGCAGCATTTGCTCTTGGTTACTTGTAGTA
ACTTGTAGGATGCCTCATGCCTGCTTCTTTTTCCCCATTTGTTTCATCACTTTTTTGTGAAATT
ATTCAGGTTGTGAGTACGTACAGGCAGTTTAAGGACTGTGAGAAGCAAATTGAAGAAACAAAAG
GTTAGCATGCTATAGTGCTTCTTCTTTTTAGAACTATGCATAGTGTTTCTTATGCCACCCTGGG
ATTAAGTGCTAGATTCTCACAAACTGTGTATGTGCTGATATGATAGTTTTGCAAAAAGAGAATG
AAGATGACCCAGATATGGCAGAGATGATTGATTCAGAGATGGAGTCTCTATCTAACCAGCTTGA
AGAGCTTGAGGAAAAACTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.123935355
Functional Information
Coding potential Y
Potential coding position 26307140-26307207(+)
Potential amino acid sequence MAEMIDSEMESLSNQLEELEEKLKVRLADPDIVSDPSEYQKLAQSVAELDQVVSTYRQFKDCEK
QIEETKVLQKENEDDPDMAEMIDSEMESLSNQLEELEEKLKVRLADPDIVSDPSEYQKLAQSVA
ELDQVVSTYRQFKDCEKQIEETKVLQKENEDDPDMAEMIDSEMESLSNQLEELEEKLKVRLADP
DIVSDPSEYQKLAQSVAELDQVVSTYRQFKDCEKQIEETKVLQKENEDDPDMAEMIDSEMESLS
NQLEELEEKLK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017