Detail information of Os11g0657100_circ_g.5


General Information
CircRNA Name Os11g0657100_circ_g.5
ID in PlantcircBase osa_circ_009910
Alias NA
Organism Oryza sativa
Position chr11: 26309066-26309337  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0657100
Parent gene annotation Peptide chain release factor 1 family protein. (Os11t0657100-01)
Parent gene strand +
Alternative splicing Os11g0657100_circ_g.1 Os11g0657100_circ_g.2 Os11g0657100_circ_g.3 Os11g0657100_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GA-CT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACAGTAAACTTATATTTGGTCTCCAGGCTTGTTGGTATTTAGATGATAGATTGTAGTTTAATA
GCAGCAGGTATCCTTGTGAACCCTTATTTTATGTCTgtaagtttctattttttagtttctattg
ttattttgtagccttcaaaactttgtttttctattttccataatctatatgcagcctgtcattt
cagtattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAAGTTTCTATTTTTTAGTTTCTATTGTTATTTTGTAGCCTTCAAAACTTTGTTTTTCTATTT
TCCATAATCTATATGCAGCCTGTCATTTCAGTATTCTGCCCATAAACATGTTCTTTATAAGCCC
ATCGTTGCGTTGTTGGTTCTAGCTATCTGGAAAGAAATGCTAAATACAGTAAACTTATATTTGG
TCTCCAGGCTTGTTGGTATTTAGATGATAGATTGTAGTTTAATAGCAGCAGGTATCCTTGTGAA
CCCTTATTTTATGTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.143723652
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017