Detail information of Os11g0568300_circ_g.6


General Information
CircRNA Name Os11g0568300_circ_g.6
ID in PlantcircBase osa_circ_009633
Alias NA
Organism Oryza sativa
Position chr11: 21180615-21180854  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0568300
Parent gene annotation Cell division cycle-associated protein domain containing protein
. (Os11t0568300-01)
Parent gene strand -
Alternative splicing Os11g0568300_circ_g.1 Os11g0568300_circ_g.2 Os11g0568300_circ_g.3 Os11g0568300_circ_g.4 Os11g0568300_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0568300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGA
ATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGCcggcactgatgacaggtttggcccctca
cttgatcatagatgcgcttaccatctttcccataaccatccacaaagagagtccagggttccac
acaagggc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 240
Transcript exons: 21180615-21180854
CGGCACTGATGACAGGTTTGGCCCCTCACTTGATCATAGATGCGCTTACCATCTTTCCCATAAC
CATCCACAAAGAGAGTCCAGGGTTCCACACAAGGGCCTAAAAGTTTCTCATCCTCTTCCGTGTA
AACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCC
TTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Genomic sequence CGGCACTGATGACAGGTTTGGCCCCTCACTTGATCATAGATGCGCTTACCATCTTTCCCATAAC
CATCCACAAAGAGAGTCCAGGGTTCCACACAAGGGCCTAAAAGTTTCTCATCCTCTTCCGTGTA
AACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCC
TTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.351804583
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017