Detail information of Os11g0568300_circ_g.2


General Information
CircRNA Name Os11g0568300_circ_g.2
ID in PlantcircBase osa_circ_009629
Alias NA
Organism Oryza sativa
Position chr11: 21179446-21180853  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os11g0568300
Parent gene annotation Cell division cycle-associated protein domain containing protein
. (Os11t0568300-01)
Parent gene strand -
Alternative splicing Os11g0568300_circ_g.1 Os11g0568300_circ_g.3 Os11g0568300_circ_g.4 Os11g0568300_circ_g.5 Os11g0568300_circ_g.6
Support reads 1
Tissues seed
Exon boundary   No-No
Splicing signals   CC-TA
Number of exons covered Os11t0568300-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCG
AATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGccttcctatacgcagcaccagttggaaa
ccatcctttcttagttctgcagatactgcaattgcaaatgccacgacaaactggacatatccaa
tcaggatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCA
AATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCACATTCTCACCA
TACCTGCATTAATTATAAAGTCAGTCCAAAATGGAGAGCTCAATCGGTTTAGGTACTAGTAGTT
TATGTACAGTCTATTTGTAATCTTCCAGTAACTAAAAGTGTGTGGGAATTTACTACTTTCCAAT
ATCTATTGCTGATCATTTCAACTTGATATTTTAATGCAAGCAAAAACTAACGGGTAGGCAGTTA
AAAAAAACACTAACAGGTAGGTGATTACCAATTCATAAAACCCTCCATGCTTGCAATAAATTCA
GAAGTCAAATTTTAAAACTTGAATACTAGGAAACCCTGTTTTGATTCACAAATTAGGACACGGA
TATTAAGAATTCTGTTTTGATTTGCAAAAACTTGAAGTTAGAAAACATATCCAGATGCAAAAAC
TGAGTAGTTTTGTTCCTGTAACTTGAACCCTGGCTCAAACCTTCAAGTTAAAGGATACAGAGAT
GCAAACATAATGTAATAGACAAAGATGGCAGAGAAGGATGTATGGAACAATCGATTAAAAAAAT
AATAGCACTAAGAAAAGATGCATGTTCGCTACAGCTATCATATGCAATAGTGTGTCCACTTTTT
TCAGGAAAATCATTGGTCGATTGAGAAAGTATGAGAAAAGAAAAGGGCCCCACCTCATGTACAA
ACAATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACAGCAGCTGGTATGATGGCCAAGA
GTTTTCTGCCTGTATCATGGAAACATCAAACTATTATGTCACAGTTTCACAACATGAACAGCAT
TTAACAGATTCTTCAGTAGAAGTAATTTAAATTGTAAATTGGCGGCTACACTAACTTGGTTTAT
TTTTCTCATTTTGTCATTACTAAGAATGTACACTGTTCCATACAGATCCTATTAGTTTAATATT
ATAGAAGGGGAACCATTGTATATTTGTGCACATTGTCTTTCTTAACCTTACAGTAACAGTCAAT
ACTATTACATCTAAGCAAAGGAACCTGTAGCAAAAGTACAGCTATACAACATTGCCATATGATT
CTTCCAGGGAAACTTACCGGCACTGATGACAGGTTTGGCCCCTCACTTGATCATAGATGCGCTT
ACCATCTTTCCCATAACCATCCACAAAGAGAGTCCAGGGTTCCACACAAGGGCCTAAAAGTTTC
TCATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTT
CATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAG
Conservation Information
Conserved circRNAs osi_circ_003192 osi_circ_009119
PMCS 0.660600345
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017