Detail information of Os11g0568300_circ_g.1


General Information
CircRNA Name Os11g0568300_circ_g.1
ID in PlantcircBase osa_circ_009628
Alias Os11circ07156/Os_ciR374
Organism Oryza sativa
Position chr11: 21179047-21180854  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene Os11g0568300
Parent gene annotation Cell division cycle-associated protein domain containing protein
. (Os11t0568300-01)
Parent gene strand -
Alternative splicing Os11g0568300_circ_g.2 Os11g0568300_circ_g.3 Os11g0568300_circ_g.4 Os11g0568300_circ_g.5 Os11g0568300_circ_g.6
Support reads 3/89/5
Tissues panicle/root/seed
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0568300-01:4
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: CCTTGGGTACAAGTCTGTGG
R: CCACCTTCATTGTCGTCCTT
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGA
ATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGCcttctggatagctttgccgctcatttct
gcatcctcttgatcctccttagcaactggagcctggtcagattcggatgaggcttctgacttgg
tagctgcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 204
Transcript exons: 21179047-21179136,21180202-21180223,21180763-21180854
CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
TCAGATTCGGATGAGGCTTCTGACTTCCTCATGTACAAACAATCCCCACCTCGATTAGAACAGA
GTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCT
ACGTTCTTCAGC

Transcript length: 234
Transcript exons: 21179047-21179213,21180788-21180854
CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
TCAGATTCGGATGAGGCTTCTGACTTGGTAGCTGCCACCTTGTTTGAATCAGCTGAGCCTGCTG
GGGATGCACGCTGTGTTGCGATGAGATAGTGAGCCACAGTTCATTGTCGTCCTTGTCCTTTTTA
GTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 280
Transcript exons: 21179047-21179174,21180202-21180231,21180733-21180854
CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
TCAGATTCGGATGAGGCTTCTGACTTGGTAGCTGCCACCTTGTTTGAATCAGCTGAGCCTGCTG
CCTCATGTACAAACAATCCCCACAGAACTGCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTC
GATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAG
CTAACAGGCTCTACGTTCTTCAGC

Transcript length: 310
Transcript exons: 21179047-21179146,21179446-21179560,21180760-21180854
CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
TCAGATTCGGATGAGGCTTCTGACTTGGTAGCTGCCCCTTCCTATACGCAGCACCAGTTGGAAA
CCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAAATGCCACGACAAACTGGACATATCCAA
TCAGGATTCTTCTTAGCTTCGAGCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCC
TTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 311
Transcript exons: 21179047-21179143,21180202-21180283,21180723-21180854
CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
TCAGATTCGGATGAGGCTTCTGACTTGGTAGCTCCTCATGTACAAACAATCCCCACAGAACTGC
CCCTGGACAATCTGGCATTTACAGCAGCTGGTATGATGGCCAAGAGTTTTCTTCTCATCCTCTT
CCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTC
CTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 346
Transcript exons: 21179047-21179179,21180202-21180255,21180696-21180854
CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
TCAGATTCGGATGAGGCTTCTGACTTGGTAGCTGCCACCTTGTTTGAATCAGCTGAGCCTGCTG
GGGATCCTCATGTACAAACAATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACACAGGG
TTCCACACAAGGGCCTAAAAGTTTCTCATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGCC
TCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGT
AGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 359
Transcript exons: 21179047-21179195,21179446-21179517,21180717-21180854
CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
TCAGATTCGGATGAGGCTTCTGACTTGGTAGCTGCCACCTTGTTTGAATCAGCTGAGCCTGCTG
GGGATGCACGCTGTGTTGCGACCTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGT
TCTGCAGATACTGCAATTGCAAATGCCACAAAAGTTTCTCATCCTCTTCCGTGTAAACTTCTTC
CTTTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTC
CGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 377
Transcript exons: 21179047-21179110,21179446-21179512,21180202-21180259,21
180667-21180854
CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
CCTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCA
AATCCTCATGTACAAACAATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACAGCAGCTT
TCCCATAACCATCCACAAAGAGAGTCCAGGGTTCCACACAAGGGCCTAAAAGTTTCTCATCCTC
TTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCG
TCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 391
Transcript exons: 21179047-21179173,21179446-21179560,21180202-21180223,21
180728-21180854
CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
TCAGATTCGGATGAGGCTTCTGACTTGGTAGCTGCCACCTTGTTTGAATCAGCTGAGCCTGCTC
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCCTCATGTACAAAC
AATCCCCAATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTC
CACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTT
CTTCAGC

Transcript length: 393
Transcript exons: 21179047-21179199,21179446-21179563,21180733-21180854
CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
TCAGATTCGGATGAGGCTTCTGACTTGGTAGCTGCCACCTTGTTTGAATCAGCTGAGCCTGCTG
GGGATGCACGCTGTGTTGCGATGAGCCTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCT
TAGTTCTGCAGATACTGCAATTGCAAATGCCACGACAAACTGGACATATCCAATCAGGATTCTT
CTTAGCTTCGAGCACCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTT
TCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACG
TTCTTCAGC

Transcript length: 475
Transcript exons: 21179047-21179120,21179446-21179571,21180202-21180259,21
180638-21180854
CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
TCAGATTCGGCCTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATAC
TGCAATTGCAAATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCAC
ATTCTCACCCTCATGTACAAACAATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACAGC
AGCCTCACTTGATCATAGATGCGCTTACCATCTTTCCCATAACCATCCACAAAGAGAGTCCAGG
GTTCCACACAAGGGCCTAAAAGTTTCTCATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGC
CTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAG
TAGCTAACAGGCTCTACGTTCTTCAGC

Genomic sequence CTTCTGGATAGCTTTGCCGCTCATTTCTGCATCCTCTTGATCCTCCTTAGCAACTGGAGCCTGG
TCAGATTCGGATGAGGCTTCTGACTTGGTAGCTGCCACCTTGTTTGAATCAGCTGAGCCTGCTG
GGGATGCACGCTGTGTTGCGATGAGATAGTGAGCCACAGACTTGTACCCAAGGCTGACAACCTG
CATGAAGGGAAAATGCTTGCTTGCTCAGAACTGTTGGATAGATTACTACATTGTTTGTGAAATA
GAGTAGTAAGCACCATCTTACATATCATCCATTATTTAGTTTCTTGTCCTACCTTGAAAGTAGG
ACAAGTACCACAAACAAACAAAAGTGAACACATGAAATTGGCATTTTGTGCTTCCAAATGTAAA
TAGATCATATCAGTACCTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCA
GATACTGCAATTGCAAATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCG
AGCACATTCTCACCATACCTGCATTAATTATAAAGTCAGTCCAAAATGGAGAGCTCAATCGGTT
TAGGTACTAGTAGTTTATGTACAGTCTATTTGTAATCTTCCAGTAACTAAAAGTGTGTGGGAAT
TTACTACTTTCCAATATCTATTGCTGATCATTTCAACTTGATATTTTAATGCAAGCAAAAACTA
ACGGGTAGGCAGTTAAAAAAAACACTAACAGGTAGGTGATTACCAATTCATAAAACCCTCCATG
CTTGCAATAAATTCAGAAGTCAAATTTTAAAACTTGAATACTAGGAAACCCTGTTTTGATTCAC
AAATTAGGACACGGATATTAAGAATTCTGTTTTGATTTGCAAAAACTTGAAGTTAGAAAACATA
TCCAGATGCAAAAACTGAGTAGTTTTGTTCCTGTAACTTGAACCCTGGCTCAAACCTTCAAGTT
AAAGGATACAGAGATGCAAACATAATGTAATAGACAAAGATGGCAGAGAAGGATGTATGGAACA
ATCGATTAAAAAAATAATAGCACTAAGAAAAGATGCATGTTCGCTACAGCTATCATATGCAATA
GTGTGTCCACTTTTTTCAGGAAAATCATTGGTCGATTGAGAAAGTATGAGAAAAGAAAAGGGCC
CCACCTCATGTACAAACAATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACAGCAGCTG
GTATGATGGCCAAGAGTTTTCTGCCTGTATCATGGAAACATCAAACTATTATGTCACAGTTTCA
CAACATGAACAGCATTTAACAGATTCTTCAGTAGAAGTAATTTAAATTGTAAATTGGCGGCTAC
ACTAACTTGGTTTATTTTTCTCATTTTGTCATTACTAAGAATGTACACTGTTCCATACAGATCC
TATTAGTTTAATATTATAGAAGGGGAACCATTGTATATTTGTGCACATTGTCTTTCTTAACCTT
ACAGTAACAGTCAATACTATTACATCTAAGCAAAGGAACCTGTAGCAAAAGTACAGCTATACAA
CATTGCCATATGATTCTTCCAGGGAAACTTACCGGCACTGATGACAGGTTTGGCCCCTCACTTG
ATCATAGATGCGCTTACCATCTTTCCCATAACCATCCACAAAGAGAGTCCAGGGTTCCACACAA
GGGCCTAAAAGTTTCTCATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAA
CAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGG
CTCTACGTTCTTCAGC
Conservation Information
Conserved circRNAs osi_circ_009118
PMCS 0.59445003
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA