Detail information of Os11g0568300_circ_g.3


General Information
CircRNA Name Os11g0568300_circ_g.3
ID in PlantcircBase osa_circ_009630
Alias Os_ciR308
Organism Oryza sativa
Position chr11: 21179447-21180854  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, circseq_cup, find_circ
Parent gene Os11g0568300
Parent gene annotation Cell division cycle-associated protein domain containing protein
. (Os11t0568300-01)
Parent gene strand -
Alternative splicing Os11g0568300_circ_g.1 Os11g0568300_circ_g.2 Os11g0568300_circ_g.4 Os11g0568300_circ_g.5 Os11g0568300_circ_g.6
Support reads 126/6/19
Tissues root/root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0568300-01:3
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: AATGCCAGATTGTCCAGGGG
R: GGTTCCACACAAGGGCCTAA
Sanger sequencing for FL    Yes
PCR primers for FL    F: CAATGAAGGTGGAAACTCTG
R: ATTGTCGTCCTTGTCCTTTT
Sequences
Splice junction sequence   TGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGA
ATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGCcttcctatacgcagcaccagttggaaac
catcctttcttagttctgcagatactgcaattgcaaatgccacgacaaactggacatatccaat
caggattc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 177
Transcript exons: 21179447-21179525,21180757-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTC
CTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 187
Transcript exons: 21179447-21179524,21180746-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGT
CGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 214
Transcript exons: 21179447-21179571,21180766-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCACATTCTCACCGA
TTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCT
AACAGGCTCTACGTTCTTCAGC

Transcript length: 236
Transcript exons: 21179447-21179560,21180202-21180232,21180764-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCCTCATGTACAAAC
AATCCCCACAGAACTGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTT
TAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 239
Transcript exons: 21179447-21179563,21180733-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCACCTTCCGTGTAA
ACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCT
TTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 246
Transcript exons: 21179447-21179560,21180723-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGTTCTCATCCTCTTC
CGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCC
TTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 257
Transcript exons: 21179447-21179570,21180202-21180281,21180802-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCACATTCTCACCTC
ATGTACAAACAATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACAGCAGCTGGTATGAT
GGCCAAGAGTTTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAG
C

Transcript length: 263
Transcript exons: 21179447-21179560,21180202-21180223,21180728-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCCTCATGTACAAAC
AATCCCCAATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTC
CACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTT
CTTCAGC

Transcript length: 268
Transcript exons: 21179447-21179577,21180718-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCACATTCTCACCAT
ACCAAAGTTTCTCATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGA
GTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCT
ACGTTCTTCAGC

Transcript length: 291
Transcript exons: 21179447-21179568,21180667-21180767,21180787-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCACATTCTCTTTCC
CATAACCATCCACAAAGAGAGTCCAGGGTTCCACACAAGGGCCTAAAAGTTTCTCATCCTCTTC
CGTGTAAACTTCTTCCTTTGATCCAGCCTCGCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAA
TTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 295
Transcript exons: 21179447-21179563,21180202-21180283,21180759-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCACCCTCATGTACA
AACAATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACAGCAGCTGGTATGATGGCCAAG
AGTTTTCCCAGCCTCGATTAGAACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTC
CGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 384
Transcript exons: 21179447-21179560,21180202-21180289,21180673-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCCTCATGTACAAAC
AATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACAGCAGCTGGTATGATGGCCAAGAGT
TTTCTGCCTGCATAACCATCCACAAAGAGAGTCCAGGGTTCCACACAAGGGCCTAAAAGTTTCT
CATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTC
ATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC

Transcript length: 400
Transcript exons: 21179447-21179571,21180202-21180259,21180638-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCACATTCTCACCCT
CATGTACAAACAATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACAGCAGCCTCACTTG
ATCATAGATGCGCTTACCATCTTTCCCATAACCATCCACAAAGAGAGTCCAGGGTTCCACACAA
GGGCCTAAAAGTTTCTCATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAA
CAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGG
CTCTACGTTCTTCAGC

Transcript length: 401
Transcript exons: 21179447-21179570,21180202-21180281,21180658-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCACATTCTCACCTC
ATGTACAAACAATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACAGCAGCTGGTATGAT
GGCCAAGAGTTTGCTTACCATCTTTCCCATAACCATCCACAAAGAGAGTCCAGGGTTCCACACA
AGGGCCTAAAAGTTTCTCATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGA
ACAGAGTTTCCACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAG
GCTCTACGTTCTTCAGC

Transcript length: 454
Transcript exons: 21179447-21179576,21180203-21180286,21180615-21180854
CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCACATTCTCACCAT
ACCTCATGTACAAACAATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACAGCAGCTGGT
ATGATGGCCAAGAGTTTTCTGCCGGCACTGATGACAGGTTTGGCCCCTCACTTGATCATAGATG
CGCTTACCATCTTTCCCATAACCATCCACAAAGAGAGTCCAGGGTTCCACACAAGGGCCTAAAA
GTTTCTCATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTCC
ACCTTCATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTC
TTCAGC

Genomic sequence CTTCCTATACGCAGCACCAGTTGGAAACCATCCTTTCTTAGTTCTGCAGATACTGCAATTGCAA
ATGCCACGACAAACTGGACATATCCAATCAGGATTCTTCTTAGCTTCGAGCACATTCTCACCAT
ACCTGCATTAATTATAAAGTCAGTCCAAAATGGAGAGCTCAATCGGTTTAGGTACTAGTAGTTT
ATGTACAGTCTATTTGTAATCTTCCAGTAACTAAAAGTGTGTGGGAATTTACTACTTTCCAATA
TCTATTGCTGATCATTTCAACTTGATATTTTAATGCAAGCAAAAACTAACGGGTAGGCAGTTAA
AAAAAACACTAACAGGTAGGTGATTACCAATTCATAAAACCCTCCATGCTTGCAATAAATTCAG
AAGTCAAATTTTAAAACTTGAATACTAGGAAACCCTGTTTTGATTCACAAATTAGGACACGGAT
ATTAAGAATTCTGTTTTGATTTGCAAAAACTTGAAGTTAGAAAACATATCCAGATGCAAAAACT
GAGTAGTTTTGTTCCTGTAACTTGAACCCTGGCTCAAACCTTCAAGTTAAAGGATACAGAGATG
CAAACATAATGTAATAGACAAAGATGGCAGAGAAGGATGTATGGAACAATCGATTAAAAAAATA
ATAGCACTAAGAAAAGATGCATGTTCGCTACAGCTATCATATGCAATAGTGTGTCCACTTTTTT
CAGGAAAATCATTGGTCGATTGAGAAAGTATGAGAAAAGAAAAGGGCCCCACCTCATGTACAAA
CAATCCCCACAGAACTGCCCCTGGACAATCTGGCATTTACAGCAGCTGGTATGATGGCCAAGAG
TTTTCTGCCTGTATCATGGAAACATCAAACTATTATGTCACAGTTTCACAACATGAACAGCATT
TAACAGATTCTTCAGTAGAAGTAATTTAAATTGTAAATTGGCGGCTACACTAACTTGGTTTATT
TTTCTCATTTTGTCATTACTAAGAATGTACACTGTTCCATACAGATCCTATTAGTTTAATATTA
TAGAAGGGGAACCATTGTATATTTGTGCACATTGTCTTTCTTAACCTTACAGTAACAGTCAATA
CTATTACATCTAAGCAAAGGAACCTGTAGCAAAAGTACAGCTATACAACATTGCCATATGATTC
TTCCAGGGAAACTTACCGGCACTGATGACAGGTTTGGCCCCTCACTTGATCATAGATGCGCTTA
CCATCTTTCCCATAACCATCCACAAAGAGAGTCCAGGGTTCCACACAAGGGCCTAAAAGTTTCT
CATCCTCTTCCGTGTAAACTTCTTCCTTTGATCCAGCCTCGATTAGAACAGAGTTTCCACCTTC
ATTGTCGTCCTTGTCCTTTTTAGTCCGAATTTCACAGTAGCTAACAGGCTCTACGTTCTTCAGC
Conservation Information
Conserved circRNAs osi_circ_003192* osi_circ_009119
PMCS 0.539450715
Functional Information
Coding potential Y
Potential coding position 21180209-21180833(-)
21179576-21180833(-)
Potential amino acid sequence MRYGENVLEAKKNPDWICPVCRGICNCSICRTKKGWFPTGAAYRKAEERRAC*(-)
MVRMCSKLRRILIGYVQFVVAFAIAVSAELRKDGFQLVLRIGRLKNVEPVSYCEIRTKKDKDDN
EGGNSVLIEAGSKEEVYTEEDEKLLGPCVEPWTLFVDGYGKDGKRIYDQVRGQTCHQCRQKTLG
HHTSCCKCQIVQGQFCGDCLYMRYGENVLEAKKNPDWICPVCRGICNCSICRTKKGWFPTGAAY
RKAEERRAC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA