Detail information of BGIOSGA019609_circ_g.3


General Information
CircRNA Name BGIOSGA019609_circ_g.3
ID in PlantcircBase osi_circ_006152
Alias 5:15637911|15642431
Organism Oryza sativa ssp. indica
Position chr5: 15637911-15642431  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA019609
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019609_circ_g.1 BGIOSGA019609_circ_g.2 BGIOSGA019609_circ_g.4 BGIOSGA019609_circ_g.5 BGIOSGA019609_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA019609-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGC
CGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAGgaagcagcggagcaagacggtttgccaa
gatctttgaaaccaacatcgcaaaactgtgaatgaggcttatggagcgaaaatctttaactcta
caagcatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGCAGCGGAGCAAGACGGTTTGCCAAGATCTTTGAAACCAACATCGCAAAACTGTGAATGAG
GCTTATGGAGCGAAAATCTTTAACTCTACAAGCATCCACCTGTTTTGGTAAGAGAGTTATAAAG
GCAGAGTTCAACTTCTTGAATTTTGACACATGTCCATGCTGAATTGCCGTTAGTAGATGGTTAC
ACTTTAGAAGAGTTAAATGACAGCAACCATTAGTAGATGGGAAACTCATTTTTTTTGTGTGTTA
TAAATTTCAGACACAGGTTTCAACTCTGATATGTGATTCAAAGCAACTTAAGAAGCTACCTGCA
ATCAGTTCCAAGTTGCAGAGTGTTAAGCATGTTATCTATATTGAGGATGAACCTGTTGAGGCTG
AGGTACTCAATCAAATGAAGCACTGGACAACATTTTCTTTTGGTGAAGTTGAAGAATTGGGTAA
AACATCACATACAGATGCAAGATTACCTTCAAGCACTGATACTGCAGTTATTATGTATACAAGT
GGAAGTACGGGTCTTCCCAAGGTACACTTGTGCTCAAAGATATTCTGATTTTTTCTGTCATATG
CTGTTATCTATTTTTATTCATGAAAATAAATAAGGACAAAAGCAGGGGTCATTCTTTCTTGTTC
CTCCTTTTCTTTTTGCTTCATCTGAAGGTGTACACACATGATGAGCCTACCATCCTGTTACTTT
CACTGAACAAGAGCTTAAGTGATGTATGATATAGAGAATTACGATCCTATTAGCCCATTAGCTT
GACAGATATTATGATAATCTCTTGGGCCTATTCTCAACGTACTCACATAACTTCCTTTTGAACT
GATGCTCTCCATAATTAAGGGCAACATTGAGAGTTATGATAATATGCAGTTATGCCCATTTAAT
TTACAAATGAGAAATAAAGCAGGACATTAAATCCTTTCTACAAATTAAATTCACTTTCCTGATA
TATACTCTCTTTTCCTCTCTTCCCCAAAGGAAAGTTGGTTTTTCCTTGGTATTTTTGCAAGTGC
AATTACCCACTTTGCTTATTGTGGAAGGATAGCAGGGATTGGAACAGGATGAACCAAACTGATC
CATCACTGCTTCATCCACTCCTCACCATCATGTAGAGATCCATGGACTGTTCCAATGTACAATT
AAGACCCTCTATAACCACTGGATCTCTAGGTTGACTCTAGTATTCAGAGAAAAAAAATAAATAA
ATTCAGAAACCATATGCATTTTGATACGCGAAAAAGGCTCAAATTTGAAATTCATAACGAGAAC
ATCATTTTGCACAAACAACTCAAAATTCCTCGGATTAGGAAAAACAGGTATAGATAAAATATAT
GAATTAACTGTTCATGAGTGTGACAACGTTCGTCTTTTTGACAAAATGATCAGCATAATGCATA
TTTTTTTGTGCAAACTTGAATTACAATCCATTGTGGATCCACAGCTATGTACTTTCATTTATCA
CAATGTCAACCACTTTTGAGTTTGCAGTTCTTGTGTCCTCTTTTAATCCAGTTTTATGGTTTCC
TTTGACATAGGGTGTAATGATTACACATGGAAATATGGTGGCCACAACTGCAGCTGTCATGACA
ATCATACCAAAACTTGGCACAGGGGATGTTTATCTGGCATACCTTCCGCTGGCTCATGTCTTTG
AACTAGCAGCAGAGGTGACATCTTTTGCAATTGAGAGATATGCCATTATTAAGAACTGTGAATA
TTTCTATGACATATTGTTGTTTTGTTTGGCCAGACTGTCATGTTAGCTTCTGGTGCTGCCATTG
GATATGGCTCAGCTCTGACTATGACAGATACATCAAATAAAATAAAGAAGGGGACAAAAGGAGA
TGTTTCTGCACTGAAGCCTACTCTTATGATTTCAGTCCCTGCAATTTTAGACCGCATCAGAGAT
GCCGTGTTTAAAAAGGTTCAAGATTCTCCTCTCATACCATCTATCTCAGTAGTTTACACCATTA
TCTTTCCATCTTTGACTAGTTCTGCAATCTTTTATATGCCATTTGCATTCAGCTGCAACATATC
TTTAGAGTGCCTTTGATGCATTAATCATTTATATGTTTAAATATCTGCCTGTGAATAAACTAAA
GAAAAAAGTTTTGAACCATACAGGTCCTAATATTGTTTTATGTTAAGCGTTATCTGTATGGCCA
TGTACTTAATTTCCTTTTCGTTTTAGTAATGTTTGACTGTATTCGCACATGCCACATATACATT
GGTCCATCTTGGACATTTTCATGTCAACTTCTAATTTTTAGAAGGCCAAATAAGAACAAACAAC
ATATGGGATATTGAGGTATTGTAATGTAAGGAAATGAAGGCAGCAATTCATAAAAATTGCAGTG
CAGAGTTGGTGAGTGGTGGATTCACAACCACCACAACCTTATTTTTAAAGGAGTGCTACTGCTA
GCAATGTGCCCACGTATTTCAATGGATGTACATGCCATATGGGATCAGCTAAAACCTAAATACT
GCAAACAGTTTATATGTCACCACTTATACCTGACCACACAACTTGGTGGGGTATAGAAGAGCAC
ACTATCACCCCCAATTCAGTATTTTTAAGGAATTAAGATTAGGATATAGATGCACTGTTTGGTT
GTCGTTTGCACATCTAGCAGCCTAGCAACTTGTAGATTTTTCTGTACCTTACACCAGGCATATC
TTAAAAAAAAAATTGATGTTCTGGCTAGCTCAATGGGCAAAGTCAAGTGCAGGCCCCAGCCATT
TCTAGCGTAGTATAACATGCATGTTTTTGGTATCATACAACACTACAACCTTCAGTTTTGGTGC
ACTGCTCTGGTCTGCATCTCTTATTTCCCAACCCTAGCCATTATAATGCCTACCATACCGTAGC
ACGCTTCATGTCTTGTCTAGCATACAAGTCTGAGCTTCGGCTGAGGCTGATAAGCCATAGAAAA
TGAAGCAACCGAAAATAAATTTTGGGTTAAACTGTTATACTCCCTCCGTTTTTTAACATATGGC
GCTGTTGACATTTTGAGATACATTTGACCATTCTTCTTATTAAAAAATATGTAATTATCATTTA
TTTTATTATGATTTGATTTATTGTCAAATGTTCTTTAAGCATGGCTTAAATTTTTTTATATTCG
CTCTAAAATTTTGAATAGGACGAATGATCAAACGTTTATCAAAAAGTTAACGGCATCATATATT
AAAAATGGGAGGTACAAGGCTGGAGAATAGACTATGATGAGAAAACCCCAAATTCAACTCTAAA
ATTAAGTTTCAAATTCAAATTGGTTGTGGCTGATAAGCCAACAAGCAGATGATGAAACCGAAGG
CTGGAAACATGTTTGAAACAATGAGTTTCTGTAGACTTAATATTTTAAATGCATTGCATCAAAT
GGCATGTATCATGCAGGCAGAATTGAACGGTCAAATGTTATGATCATGCACCAAAATATGGTTT
AAACATACTTCTCATCTCAAAACTTAATATTTAAATTATGTTTCCAGGTTGGTGAGAAGGGTGG
TCTGACCAAAAAGCTGTTTGACATTGCCTATAAACGAAATCTTGGAGCCATTGAAGGAAGTTGG
TTTGGATCCTGGGCACCAGAGAGGATGATATGGGATAACCTCATTTTTAAACCAATACGTTCCA
TGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTATCGAGTGACACACAAAG
ATTTATGAATATATGTCTTGGGTAATTTCTTTTGTCCTATTTGGATTATCTTAAATTTAACCAT
TTGCATCAGTGAGATGTCATGAAGAAGTATTCTTCCAAAAATTTCCACTGAGTTTATTTGTTGA
AGATTGTGTGCCAGTCGTAGAGCATAGTGTCATTTCTCGGATACTTGAATTATCTTTGTTTTCT
TCGAAAAATGAGGCTAGAATTACATGAATTCCAAAAACATACAAGGAGTCAACTTTTTTTTTGT
CTTATTGTACATCTTAAGTTTGTTTAAGACGTTACTAAAAAAAATACTGATTTTAATGAACTTA
CCTCATGGAAAATTCAAGTTCAATGCCATACTCAAGTCCTAGACATTGTTAGAGTGTACGTTTG
CAGGTAGTGCGCTCATCAAACCTTTGGATTTATTTATTTACAGAAAACAAAACATTTGTTGGAT
AAGCTCATAAAATTTGGGCGTGCTACTTATATGTTTTTTTAATTCAAACAGTTTGTCAAAAATC
ACTTTATAGTGAAATTTGTATTTGCACGTTTAGTGAATCAAATGCTGAAAGTTGAAATATTAAA
CAGAGGACCTTTCTAGAGTACATGCACTATGCTATAATGTGATGAGCTTCCTTTTATTGTATGT
CGCTGCATTTGTTTTTGGTTCTTATGCAGTTTTGAATTACCTGTGCTGCAGTGTACCAGTAGGT
CAAGGCTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTG
TGGGCCGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAG
Conservation Information
Conserved circRNAs osa_circ_027413*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021