Detail information of BGIOSGA019609_circ_g.6


General Information
CircRNA Name BGIOSGA019609_circ_g.6
ID in PlantcircBase osi_circ_015316
Alias Chr05:14944444_14945465(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 15641413-15642431  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA019609
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019609_circ_g.1 BGIOSGA019609_circ_g.2 BGIOSGA019609_circ_g.3 BGIOSGA019609_circ_g.4 BGIOSGA019609_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA019609-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGC
CGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAGggttggtgagaagggtggtctgaccaaa
aagctgtttgacattgcctataaacgaaatcttggagccattgaaggaagttggtttggatcct
gggcacca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGGTGAGAAGGGTGGTCTGACCAAAAAGCTGTTTGACATTGCCTATAAACGAAATCTTGGA
GCCATTGAAGGAAGTTGGTTTGGATCCTGGGCACCAGAGAGGATGATATGGGATAACCTCATTT
TTAAACCAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCT
ATCGAGTGACACACAAAGATTTATGAATATATGTCTTGGGTAATTTCTTTTGTCCTATTTGGAT
TATCTTAAATTTAACCATTTGCATCAGTGAGATGTCATGAAGAAGTATTCTTCCAAAAATTTCC
ACTGAGTTTATTTGTTGAAGATTGTGTGCCAGTCGTAGAGCATAGTGTCATTTCTCGGATACTT
GAATTATCTTTGTTTTCTTCGAAAAATGAGGCTAGAATTACATGAATTCCAAAAACATACAAGG
AGTCAACTTTTTTTTTGTCTTATTGTACATCTTAAGTTTGTTTAAGACGTTACTAAAAAAAATA
CTGATTTTAATGAACTTACCTCATGGAAAATTCAAGTTCAATGCCATACTCAAGTCCTAGACAT
TGTTAGAGTGTACGTTTGCAGGTAGTGCGCTCATCAAACCTTTGGATTTATTTATTTACAGAAA
ACAAAACATTTGTTGGATAAGCTCATAAAATTTGGGCGTGCTACTTATATGTTTTTTTAATTCA
AACAGTTTGTCAAAAATCACTTTATAGTGAAATTTGTATTTGCACGTTTAGTGAATCAAATGCT
GAAAGTTGAAATATTAAACAGAGGACCTTTCTAGAGTACATGCACTATGCTATAATGTGATGAG
CTTCCTTTTATTGTATGTCGCTGCATTTGTTTTTGGTTCTTATGCAGTTTTGAATTACCTGTGC
TGCAGTGTACCAGTAGGTCAAGGCTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTG
AATGGGATGACACAAGTGTGGGCCGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAG
Conservation Information
Conserved circRNAs osa_circ_027417
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021