Detail information of BGIOSGA031532_circ_g.6


General Information
CircRNA Name BGIOSGA031532_circ_g.6
ID in PlantcircBase osi_circ_008617
Alias Chr10:22039038_22040001(MH63RS2), Chr10:22545459_22546421(ZS97RS2), Chr10:22039038_22040001(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19167134-19168097  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene BGIOSGA031532
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031532_circ_g.5 BGIOSGA031532_circ_g.7 BGIOSGA031532_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA031532-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTATACCACCGTCCAGCCATCGCCAATGCAGCATCAAATCTCCTCATGAGCCCATGAAGCATG
AACACCAGGGAATAAATGTTCCACATTGCTACAGCTcctgctttggcttcccattttgacctcc
aattgatgtcacaataatctgacctgtttctgttccatttgcattaacaataacaccttcagat
tcctataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCC
ATTTGCATTAACAATAACACCTTCAGATTCCTATAATCAGAAAAACTACGACATAAGTAACGAA
AGTAGGGTGGCATTATGTCAAGAAGTGACAAGTCAAATGGTATCAAAATAACCTTATCATTATG
GCCATCAACTTTATCATCACTTATTGTCATCTCATTCATTTCTTTTGGAAGAATATCCGCACCT
GCTTCTTCAGTTCTACCAGGATTCTTACTAGTAGATGTGCTTGCCTCAGCATCTCTATGAGATG
AAGATGATTCTTGGTCTACGCGCATAGGTTTGTCATCAGTTAGATGTGGCTCAATGACTATATC
TCCTGCTCCATCCTGATCGAATTTTGGTCTTTTGGTGCCAGAATCACCACCCTAACAAGAACAA
TATAGGTTATCAACTCAAGCTCATAATAGGGAGGAGAAACTAATCCTACTTTCCTTATTCTCAA
GCACAGAATTCATATTCATCCGCTAGAAGTCACATACTATACCTATTAGCTAACATTGTGCATC
AAACTCTTCCACCAATTCATTCTACAATATACACTGCCCAGTGCCCAATTTTTTTATTGTGATT
GGTGAGCAATGTTTTGTTCTCAGTATTATGAGACATCAACTACGTCATCAATCACATCCTTCTG
AAAAGCTGTTCAACGCTCAACAAAGCAAGACTACGATTAAGGGACATGACCAAAGCAGACCCAT
CATGAAAAGTTACACATTGAAAAGCATTTCCTTGATAACTTCCCAATCCAATAAACCTATTATT
GGCAGATTCTCTTTTTCTAGTAATGTCGGACAGCTATACCACCGTCCAGCCATCGCCAATGCAG
CATCAAATCTCCTCATGAGCCCATGAAGCATGAACACCAGGGAATAAATGTTCCACATTGCTAC
AGCT
Conservation Information
Conserved circRNAs osa_circ_007727
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021