Detail information of Os10g0320400_circ_g.3


General Information
CircRNA Name Os10g0320400_circ_g.3
ID in PlantcircBase osa_circ_043164
Alias NA
Organism Oryza sativa
Position chr10: 8693181-8693916  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os10g0320400
Parent gene annotation Similar to ATP synthase gamma chain, mitochondrial precursor (EC
3.6.3.14). (Os10t0320400-01)
Parent gene strand +
Alternative splicing Os10g0320400_circ_igg.1 Os10g0320400_circ_g.1 Os10g0320400_circ_g.2 Os10g0320400_circ_g.4 Os10g0320400_circ_g.5 Os10g0320400_circ_g.6 Os10g0320400_circ_g.7 Os10g0320400_circ_g.8
Support reads NA
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0320400-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTATCAACTCAACGTCAG
TTAAAGTCAGCAAAGCACTCCACAAGTTGACTTCTGccattcaccgctcttcttggggatgtcc
ctagtatgttatgtttcgttgtagtacatatttacagtacctttctgccgtagttattatagct
aaagttga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 145
Transcript exons: 8693181-8693211,8693803-8693916
CCATTCACCGCTCTTCTTGGGGATGTCCCTAGTGTCGATGTCAAGAAGAATGTTATTGTAGCCA
TTACCTCTGACAAGGGTCTTTGTGGTGGTATCAACTCAACGTCAGTTAAAGTCAGCAAAGCACT
CCACAAGTTGACTTCTG

Genomic sequence CCATTCACCGCTCTTCTTGGGGATGTCCCTAGTATGTTATGTTTCGTTGTAGTACATATTTACA
GTACCTTTCTGCCGTAGTTATTATAGCTAAAGTTGATGCCTATCTTATTGAATGTCATGATATG
CTAGAAGCCTATGGCTACATTAGCATGCCTGGCTGCCACAAATCAAATGTACAACCTTATTCAT
GATCTAGGAAGTTCATTTGATGTTGGTTCTTAAAAGTCAATGGCATTCAAGGTAAGAGATATTT
GATGGTGGGTAATTATCCCTGGTAAAGAAATATGTAGATATATATACTATGGGTGAATCTTCTG
AGCTATTGGTTCAGTGGTGTAAGCATGGACTCTACATCTATTTACTAGACACGCTTCTCACTAA
TTTATAAATGCACCACAGGTCTCATGCCACTTCTAATGATGCTGTGATCCTCAATTCATGAGGA
AACATTGATAGGCTTGCCTGTTGAGTTTACTCCATGCTTGGATCTGTCTAAATTATTTAATTCT
TACGGAACAGCAGTTTTAATTTAACTGAATTAGATTGACATCATGTCTTTTTGGCAATAAGATT
ATTGAGTTTTTGGTTTAGTTATTAATGTCTTTGATGCAACCACCAGGTGTCGATGTCAAGAAGA
ATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTATCAACTCAACGTCAGTTAA
AGTCAGCAAAGCACTCCACAAGTTGACTTCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.144829812
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study