Plant Circular RNA Database

Detail information of Os02g0452500_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os02g0452500_circ_g.6
					
						ID in PlantcircBase
						osa_circ_014575
					
						Alias
						Os02circ12299/Os_ciR2117
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 14945579-14946943  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os02g0452500						
					
						Parent gene annotation
						
							Similar to SNARE-interacting protein KEULE. (Os02t0452500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0452500_circ_g.1 Os02g0452500_circ_g.2 Os02g0452500_circ_g.3 Os02g0452500_circ_g.4 Os02g0452500_circ_g.5 Os02g0452500_circ_g.7 Os02g0452500_circ_g.8 Os02g0452500_circ_g.9 Os02g0452500_circ_g.10 Os02g0452500_circ_g.11 Os02g0452500_circ_g.12 Os02g0452500_circ_g.13 Os02g0452500_circ_g.14 Os02g0452500_circ_g.15 Os02g0452500_circ_g.16 Os02g0452500_circ_g.17 Os02g0452500_circ_g.18 Os02g0452500_circ_g.19 Os02g0452500_circ_g.20 Os02g0452500_circ_g.21 Os02g0452500_circ_g.22 Os02g0452500_circ_g.23 Os02g0452500_circ_g.24 Os02g0452500_circ_g.25 Os02g0452500_circ_g.26 						
					
						Support reads
						3/7
					
						Tissues
						leaf/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0452500-01:4

General Information
CircRNA Name	Os02g0452500_circ_g.6
ID in PlantcircBase	osa_circ_014575
Alias	Os02circ12299/Os_ciR2117
Organism	Oryza sativa
Position	chr2: 14945579-14946943 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	SMALT, Segemehl, find_circ
Parent gene	Os02g0452500
Parent gene annotation	Similar to SNARE-interacting protein KEULE. (Os02t0452500-01)
Parent gene strand	-
Alternative splicing	Os02g0452500_circ_g.1 Os02g0452500_circ_g.2 Os02g0452500_circ_g.3 Os02g0452500_circ_g.4 Os02g0452500_circ_g.5 Os02g0452500_circ_g.7 Os02g0452500_circ_g.8 Os02g0452500_circ_g.9 Os02g0452500_circ_g.10 Os02g0452500_circ_g.11 Os02g0452500_circ_g.12 Os02g0452500_circ_g.13 Os02g0452500_circ_g.14 Os02g0452500_circ_g.15 Os02g0452500_circ_g.16 Os02g0452500_circ_g.17 Os02g0452500_circ_g.18 Os02g0452500_circ_g.19 Os02g0452500_circ_g.20 Os02g0452500_circ_g.21 Os02g0452500_circ_g.22 Os02g0452500_circ_g.23 Os02g0452500_circ_g.24 Os02g0452500_circ_g.25 Os02g0452500_circ_g.26
Support reads	3/7
Tissues	leaf/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0452500-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGATTAATTCTTTAGTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCTC
GAAGACCTTGCTCCCTTATTATGCTATTGAGTTTACctctagaacaggataaaatcgggaaagt
gcccatgtagattcttccccagttcgctcctttctaagtccatgcttcttctgttatcagtagg
aatcaatt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 410
Transcript exons: 14945579-14945656,14945753-14945869,14946623-14946718,14
946825-14946943
CTCTAGAACAGGATAAAATCGGGAAAGTGCCCATGTAGATTCTTCCCCAGTTCGCTCCTTTCTA
AGTCCATGCTTCTTCTTGTGAACATCAAATTTAAACGTAAAACCTCCTCCCGAGGACTTTTTGG
TGTCAGGGCCACATAAGCAACGCATATTACTCACAGCAATCATGTCATCAGTGGATAATCCTGC
CAACTGCATCAATTTTTCACCCTTGTCACTTTCGAACTTGTCTGGGTTGATTGCTGCATAGATC
ATCAGCAAACGCAACTTGTTTTCACGACTTACACCCAATTGTGTCCTCAAAAAATTGATTAATT
CTTTAGTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCTCGAAGACCTTG
CTCCCTTATTATGCTATTGAGTTTAC
						
					

						Genomic sequence
						
							CTCTAGAACAGGATAAAATCGGGAAAGTGCCCATGTAGATTCTTCCCCAGTTCGCTCCTTTCTA
AGTCCATGCTTCTTCTGTTATCAGTAGGAATCAATTAATACATCATGAGATCAGGTTGGTAGCA
GATAAATGTTCAGAAAGAACCAAAAAGAAAGCAATATTTCGTTTACCTTGTGAACATCAAATTT
AAACGTAAAACCTCCTCCCGAGGACTTTTTGGTGTCAGGGCCACATAAGCAACGCATATTACTC
ACAGCAATCATGTCATCAGTGGATAATCCTGCCAACTGTTAGCAAGCGAAATTTCTTACTGATT
CCTGGCCAAGCATATACTCAAATCCAAATAATGTCCAAAATGGGCTCCTATCAACAATTCTGCA
CAGTTGCTTTACGAATTACTCCCTCCATTCGAAATTGATCTACATATAATTTTTTTGAGGTTAT
TCCTAAATGATCTACATATTTGTGTTCATTTATTAAGTCTATTCGTTATTTGTGCATTGGAGTA
AATGGACATTGATGCATGAATCCATGCACACAAGTATTTATAACCCACATGCAATATCTTGATT
TGCTATTGGCTAGGAAATAGTGGGGATGGTGCATGCATTGAGTTTGTTGCTAGAGTAAATATAG
TATGAGAGAGTTATTAGCTTTTCTTGGTCTTGGTGTACCTATGAAATATGTAGATCAATTTGGA
ATGGAGGGAGTAAAACACTATGTCATATTGTTCACCTGTGTTACACCAGATATTTAATGCCAGC
ATAGAAGTCACGCTTATCCAATATGAAAAGAAACTGCATGTTTCATTCATGCACGTTTCATGTA
TTCAATTATTATCGCATTGATGATAGAGAGTAAAGGGTAGACATACTTGGTGATATTTCATGAA
AAGAAAATTTACAATAAAGCAAAAGGGAAACAGTGGAAGGTGAAAAACAACAACTTATCTAGCC
AAAAAGTTGCACAGAAAAGTATACAGATTAAGCATAAAACATCTTGGGTTTGTTGAGTACGAAT
AGAAAAACAGAAAATTTTACCTGCATCAATTTTTCACCCTTGTCACTTTCGAACTTGTCTGGGT
TGATTGCTGCATAGATCATCAGCAAACGCAACTTGTTTTCACGACTTACACCCTGCATTAAGTA
GAGTAAACAATGTCATTATTAAGTCAGTAATATCAAAACACAATGTTGAAGAACAACCAATGTC
ATTCTAAAAAGTAATTCAAATATTAAATACCAATTGTGTCCTCAAAAAATTGATTAATTCTTTA
GTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCTCGAAGACCTTGCTCCC
TTATTATGCTATTGAGTTTAC
						
					

			
		

Sequences
Splice junction sequence	TTGATTAATTCTTTAGTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCTC GAAGACCTTGCTCCCTTATTATGCTATTGAGTTTACctctagaacaggataaaatcgggaaagt gcccatgtagattcttccccagttcgctcctttctaagtccatgcttcttctgttatcagtagg aatcaatt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 410 Transcript exons: 14945579-14945656,14945753-14945869,14946623-14946718,14 946825-14946943 CTCTAGAACAGGATAAAATCGGGAAAGTGCCCATGTAGATTCTTCCCCAGTTCGCTCCTTTCTA AGTCCATGCTTCTTCTTGTGAACATCAAATTTAAACGTAAAACCTCCTCCCGAGGACTTTTTGG TGTCAGGGCCACATAAGCAACGCATATTACTCACAGCAATCATGTCATCAGTGGATAATCCTGC CAACTGCATCAATTTTTCACCCTTGTCACTTTCGAACTTGTCTGGGTTGATTGCTGCATAGATC ATCAGCAAACGCAACTTGTTTTCACGACTTACACCCAATTGTGTCCTCAAAAAATTGATTAATT CTTTAGTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCTCGAAGACCTTG CTCCCTTATTATGCTATTGAGTTTAC
Genomic sequence	CTCTAGAACAGGATAAAATCGGGAAAGTGCCCATGTAGATTCTTCCCCAGTTCGCTCCTTTCTA AGTCCATGCTTCTTCTGTTATCAGTAGGAATCAATTAATACATCATGAGATCAGGTTGGTAGCA GATAAATGTTCAGAAAGAACCAAAAAGAAAGCAATATTTCGTTTACCTTGTGAACATCAAATTT AAACGTAAAACCTCCTCCCGAGGACTTTTTGGTGTCAGGGCCACATAAGCAACGCATATTACTC ACAGCAATCATGTCATCAGTGGATAATCCTGCCAACTGTTAGCAAGCGAAATTTCTTACTGATT CCTGGCCAAGCATATACTCAAATCCAAATAATGTCCAAAATGGGCTCCTATCAACAATTCTGCA CAGTTGCTTTACGAATTACTCCCTCCATTCGAAATTGATCTACATATAATTTTTTTGAGGTTAT TCCTAAATGATCTACATATTTGTGTTCATTTATTAAGTCTATTCGTTATTTGTGCATTGGAGTA AATGGACATTGATGCATGAATCCATGCACACAAGTATTTATAACCCACATGCAATATCTTGATT TGCTATTGGCTAGGAAATAGTGGGGATGGTGCATGCATTGAGTTTGTTGCTAGAGTAAATATAG TATGAGAGAGTTATTAGCTTTTCTTGGTCTTGGTGTACCTATGAAATATGTAGATCAATTTGGA ATGGAGGGAGTAAAACACTATGTCATATTGTTCACCTGTGTTACACCAGATATTTAATGCCAGC ATAGAAGTCACGCTTATCCAATATGAAAAGAAACTGCATGTTTCATTCATGCACGTTTCATGTA TTCAATTATTATCGCATTGATGATAGAGAGTAAAGGGTAGACATACTTGGTGATATTTCATGAA AAGAAAATTTACAATAAAGCAAAAGGGAAACAGTGGAAGGTGAAAAACAACAACTTATCTAGCC AAAAAGTTGCACAGAAAAGTATACAGATTAAGCATAAAACATCTTGGGTTTGTTGAGTACGAAT AGAAAAACAGAAAATTTTACCTGCATCAATTTTTCACCCTTGTCACTTTCGAACTTGTCTGGGT TGATTGCTGCATAGATCATCAGCAAACGCAACTTGTTTTCACGACTTACACCCTGCATTAAGTA GAGTAAACAATGTCATTATTAAGTCAGTAATATCAAAACACAATGTTGAAGAACAACCAATGTC ATTCTAAAAAGTAATTCAAATATTAAATACCAATTGTGTCCTCAAAAAATTGATTAATTCTTTA GTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCTCGAAGACCTTGCTCCC TTATTATGCTATTGAGTTTAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_003891* osi_circ_011655 osi_circ_003892* osi_circ_011656 
						
						PMCS
						0.225978181

Conservation Information
Conserved circRNAs	osi_circ_003891* osi_circ_011655 osi_circ_003892* osi_circ_011656
PMCS	0.225978181

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							14945614-14946928(-)
14946687-14946928(-)
						
						Potential amino acid sequence
						
							MGTFPILSCSRGKLNSIIREQGLRDVGQLEQDLVFGDAGTKELINFLRTQLGVSRENKLRLLMI
YAAINPDKFESDKGEKLMQLAGLSTDDMIAVSNMRCLCGPDTKKSSGGGFTFKFDVHKKKHGLR
KERTGEESTWALSRFYPVLEVNSIA*(-)
MIYAAINPDKFESDKGEKLMQLAGLSTDDMIAVSNMRCLCGPDTKKSSGGGFTFKFDVHKKKHG
LRKERTGEESTWALSRFYPVLEVNSIA*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	14945614-14946928(-) 14946687-14946928(-)
Potential amino acid sequence	MGTFPILSCSRGKLNSIIREQGLRDVGQLEQDLVFGDAGTKELINFLRTQLGVSRENKLRLLMI YAAINPDKFESDKGEKLMQLAGLSTDDMIAVSNMRCLCGPDTKKSSGGGFTFKFDVHKKKHGLR KERTGEESTWALSRFYPVLEVNSIA(-) MIYAAINPDKFESDKGEKLMQLAGLSTDDMIAVSNMRCLCGPDTKKSSGGGFTFKFDVHKKKHG LRKERTGEESTWALSRFYPVLEVNSIA(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015

circRNA

Detail information of Os02g0452500_circ_g.6

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