Detail information of 3_circ_ag.3


General Information
CircRNA Name 3_circ_ag.3
ID in PlantcircBase ath_circ_023359
Alias NA
Organism Arabidpsis thaliana
Position chr3: 8415974-8420595  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 3_circ_ag.2 3_circ_ag.4 AT3G23470_circ_g.1 3_circ_ag.2 3_circ_ag.3 AT3G23470_circ_g.4 AT3G23470_circ_g.5 AT3G23470_circ_g.6 3_circ_ag.7 3_circ_ag.8 3_circ_ag.9 AT3G23480_circ_g.1 AT3G23480_circ_g.2 AT3G23480_circ_g.3 AT3G23490_circ_g.1 3_circ_ag.2 3_circ_ag.3 AT3G23510_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 3_circ_ag.8 3_circ_ag.9 3_circ_ag.10 3_circ_ag.11 3_circ_ag.12 3_circ_ag.13 AT3G23510_circ_g.14 3_circ_ag.15 3_circ_ag.16 3_circ_ag.17 3_circ_ag.18 3_circ_ag.19 3_circ_ag.20 3_circ_igg.21 AT3G23530_circ_g.1 AT3G23530_circ_g.2 AT3G23530_circ_g.3 AT3G23530_circ_g.4 AT3G23530_circ_g.5 AT3G23530_circ_g.6 AT3G23530_circ_g.7 AT3G23530_circ_g.8 AT3G23530_circ_g.9 AT3G23540_circ_g.1 AT3G23540_circ_g.2 AT3G23540_circ_g.3 AT3G23540_circ_g.4 AT3G23540_circ_g.5 AT3G23540_circ_g.6 AT3G23540_circ_g.7 AT3G23540_circ_g.8 AT3G23540_circ_g.9 AT3G23540_circ_g.10 AT3G23540_circ_g.11
Support reads 41
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATACTAGAAGGAGACACGATATTCATATTTGGGGAAAATGAATCTACTTGTCCTTTGAAATCT
ATCCTCAAGATTCACAGTCCTCAGTTTTACTGGAAGgttatgacacaagcagatttaggactcg
cagatgcttatatcagtggagatttttctttcgtcgataaagactcaggacttttgaatttgat
tatggtac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTATGACACAAGCAGATTTAGGACTCGCAGATGCTTATATCAGTGGAGATTTTTCTTTCGTCG
ATAAAGACTCAGGACTTTTGAATTTGATTATGGTACATGTTACATACTCTACTTGTGCATATAT
GGATACTTACTTCTTCGATTGTTCGAGTTATTTCTAATGTTAATTTGCAGATTCTCATCGCTAA
CAGAGACCAGCGCTCACCAAAATCAAACCTTGTTAAGAAAAGGTAGAAGCTTAACAACTTTCTC
CATGAAGACTTTATAGGCTTAGCATGCAAACTTTCTCCCTTACGCTTTCACTTTATCTTTTGTA
ATCTTACAGGGGATGGTGGACCCCGGTGTTTCTAACTGCCGGTTTAGCATCCGTAAAATATTAT
CTAAAGCATGTCTTAAAACAGAACACTCTAACTCAAGCTCGAAAGAACATTTCTAGTCACTATG
ACCTTGTATGTATCTTCAAAATCCACCTCTCTTTAAATATCTATGAACATTTTCTTAGTCTTTT
GTTGTTTATTATCGGTTTCTCTTTTCACAGAGCAACGAGTTTTTCGGTCTCTTCATGGATGATA
CCATGATGTACTCCTCTGCAATATTCAAGGTGACCATTAAAAAACTTCAAAGGATTTTTTCTCT
TTTTCAGTTTCTTTTACTTTATTATGACCCTGACATCAACTTTTCGCCATTTTTCATGTTTATA
GTCAGAAAATGAGGATCCTAGAACTGCACAGATGAGAAAAATATCTCTTTTAATTGAAAAGGTA
AGGTCTACAGGAGACATTTTCTTGATTTATAACAAGAAGTCAAGAGTACACGTATTTTTTATTT
GTTCTTTAATGATCAATTGTGGGAAATTTCAGGCGAGGATAGAGAAGAACCATGAGGTCTTAGA
GATGGGATGCGGATGGGGAACTTTTGCCATAGAAGTTGTGAAAAGAACTGGATGCAAATACACT
GGCATTACTCTTTCTATTGAACAGCTTAAATATGCAAAAGCAAAAGTGAAAGAAGCTGGACTTC
AGGTTCTTGTCTAATAAACTTTTCTAATACCATGAATATTGTGTGCCTTATGATGAACAATATT
CCTTTTGAATCACCAGGGTCGGATTACGTTTATGCTCTGCGATTATCGCCAACTATCTGATGCT
CGCAAATATGACAGAATTATAGCTTGGTAAAACTCTTTTTTTGTCCATCTTTGTTAAATTACCT
TGTAATCTGTTTATGACATAACATTTCTGGATGTTTCAGTGAGATGATAGAAGCGGTTGGCCAC
GAGTTTATGGATAAGTTTTTCAGTTGTTGTGAAGATGCGCTTGCAGAAAACGGCATTTTTGTCC
TACAGGTAACACTTGCTTCTTCCTCACGGTTCCCTCATCATTATATTGCAAAATCATTGATCGT
TTTAATGGTTAACTGTACAACAGTTCACAGCGATACCCGAGGCTCTTTACGACGAGAGCAGACT
AACTTCAGGTTTCATAACGGAATACATATTCCCTGGTGGATGTCTTCCTTCTTTAGCCAGAGTT
ACTTCAGCCATGGCCTCTTCCTCTAGGCTATGGTAAAATCTTTTCTTTATCAAATTTTAGCTTC
AAATGCAATTCTCTGCTTTCTCCTTCTCCGACGGCCTACCTAGTATCTAACACCGGGTCAAATA
CAGCATTGAAAACGTTGAGAACATTGGGATCCATTACTACCACACGTTGAGATGTTGGAGGAAG
AACTTTTTGGAGAGACAAAAGTAAGATGAAAATATTAAAAACCTTTCCTCTGTTTTGCTTTTCA
GGAATCTGTATGTTTTTTCATATGTCCAATAAAACTAACTATTATCTGCGCAGACAAATCATCG
ATCTTGGATTCGACGATAAATTCATAAGGACATGGGAATATTATTTCGACTATTGTGCAGCTGG
TTTCAAGACTCTTACCCTTAGAAGCTACCAGGTAAAACACACACTCGAGCACATTAATAGAAAC
ATAAGCATGTCGTTTTCCTCAAGTCTCATTTTAGACTTGCTTTGAATAACTTATATGCATTCAT
GTAACATTGCAGATAGTTTTCTCACGCCCAGGGAACGTCGCTGCGTTCGGTGATGATGATCCAT
TCCGCAGTTCCACTAGAAAAAACAACATTATATAGATGAAACAAAAGATTATCTTAGACGCTCG
AAAATGTTCTGCTTTCATGATTGATTATGCATTCTGTATAAACAGCTTTTCTCTGTCCAGACCA
TTATAAAGCAAAAGATTATACATAACCTGAAATGTGTGTGAACATTTATTCAAGCTGTTATGGT
GCAATGGTTCACTTCCATTGAAAAAAACTTTACTGCTGTCCAAGATTGAGTACTATGATGTAAC
TCAAGATCTCTGTGAAAGGGCTAACACATGGACAAAACGGTCAATACTACACATAATTACATGA
GACACATGGATGCAAATACACTGGTATTAGTATTACACTATCTATTGAACAACTTAGATGTTTT
AAATAAGTATATAACCATGCCTTTTTCCGCAAATCTCATTATAGACTTGAATTGAATAACTTAT
ATCATGCATTTCTGCAACATTGTAGATAGCTTTCTCACGTCCAAGGAACATAGTTTTTATTCGG
TGAAGATGTGTGACAGGACTAAAATCACAGTCCATTTCTTTCTCTACCGCACTATTTCAATAAA
TATCTAAACCCATTTTCGGTTTGTTCATCCGGTCAAGCTTTGTAAAATTCAACCTTGGCCAGAT
GTTGGACCACACAAACCTTGTGTACACATGTGTCATTTGAAGAATATAATCAATAGTTTATCAT
CTACCTTATCTCATCTTTCTCCCTCTCTCCTCATTCTTGCTCGTCATCAATCATCATCATCCGA
AACCTCAGATCTCTAAGGTACTTATTTATTCTCAAATCACTTTTTAGGTTGTATTTTACCTAGG
TTTGTTATTATTTTCTCCGAGAATATAGAAAACTCTGGATAGGATTATTATTATTTTCTCTATC
CTATGGTTTCAAGATGATCCATTCCACAGCTTTGTGTTAACTAAAAAAACTAGCAATGTTAGAT
GAATCATTTCCAATCTGGAGTACTACTCCCATTTCTTGTGTTAATTTCCCCGAGAAACACATTA
GACTATTATTTTCTTGAAAATGTGTGAATTCACAACAAGATATTTTTTTATTTTAACTAAATTA
AAAATAGAACATGTGAAAAACAAGAGATAATCAGATAGCGACCCCAACATCAGTTTTCACGTAT
GGATTTGATATATAACAGAACACAATGTGGCTTGTTTATGCTATAACTCGCTTATTCTTCAATC
ACTCTCCAATTTCTTCATATTAGGCTTTTGTTTATCAAATTTATTCCCGTTTTTTGGAAAATAT
ATAAATAATCATCAGAAGAAAAAAGACAAAGAAAAACCTACTTTTGGTAAATTCAGTCCAGCCA
ACTTTCACTTTCCAAGTCTATTAATTGTGTGCCAAGTACAAGGTTTTTTTATTAGAATATAATT
TTACATTTTTTCAGGAAAAAAAAAAAAACACTGCTGACTACATTTATCTTCTTTTTTTTTTTTC
ATTTTCTTTCAAATATTTATTCATTGGTGTCTCGGTTCTTATATTAGGGTCTTTGCATTCTCCA
TCCTCCTATCAGTACTCCCTCTTCTCTTTAGGGTATGAGTTTCATCAATAGCTCAGCATCTGAA
AAACAACTACTCTAATTTGGATCCATCACATAAAAACAACTACTCTAATTTGGATCCATCACAT
CCGCAAATATCCATAATAATATAAAATTACAGAAATAAAATGTGTCATATAATCTTTTTCAAAC
TAATATAAATAAATATGTTAGACATTTATTAAGGACATTCTCAAATATATCACACTTTTTATTA
TTATGATATTATATATCTAAATATTATACATATTTGAAAACAAATTAATATATGAAAGCTGATC
CGGACCAAATCTTAAATTACGATATTTGGCTCCTAATTTCCAGAACTTCACATATCATTTTTAT
CAGAACAGATCGGATATGGATATCATGACTTTTAATTCGAATAATTTTATAAGAACTATAATAA
ATTTTAATATTGTTTTAGTTTGTATATATTATGTTTGTTTAAGATGTTCTTAATTAGGGTAAAC
TCTTGACACATAGAATCTAAAGCAATATAATTAGTTATCTTTTCATGGTTTTTAATTGTCTGAT
CCATGAAGACAGACTAAAAGGCAATGATCACTCCACATTGAATATGTAAATAACTCTTCTTCTC
TTTTTGTTATCTTTAGGCCGGGATGGTAATTGCACGAGGTTTGTTAGGGATACAAACAACTCTT
GTGAAAAATATGCAACATATGGTATTTTCCCTAACCGAAGCAGGGGCTCGACTTTTCGTTACCA
GATTCTTTAGACAATTCATATCGATCGGTTGTGTAACGTGAGACTCACTTTATTTCCTCGATTC
AAATAATATAATGTTACACATTAATACTTATGAACTGAACAGGATACTAGAAGGAGACACGATA
TTCATATTTGGGGAAAATGAATCTACTTGTCCTTTGAAATCTATCCTCAAGATTCACAGTCCTC
AGTTTTACTGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.516543486
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017