Detail information of 3_circ_ag.8


General Information
CircRNA Name 3_circ_ag.8
ID in PlantcircBase ath_circ_023368
Alias 3:8418034-8422552
Organism Arabidpsis thaliana
Position chr3: 8418034-8422552  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 AT3G23470_circ_g.1 3_circ_ag.2 3_circ_ag.3 AT3G23470_circ_g.4 AT3G23470_circ_g.5 AT3G23470_circ_g.6 3_circ_ag.7 3_circ_ag.9 AT3G23480_circ_g.1 AT3G23480_circ_g.2 AT3G23480_circ_g.3 AT3G23490_circ_g.1 3_circ_ag.2 3_circ_ag.3 AT3G23510_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 3_circ_ag.8 3_circ_ag.9 3_circ_ag.10 3_circ_ag.11 3_circ_ag.12 3_circ_ag.13 AT3G23510_circ_g.14 3_circ_ag.15 3_circ_ag.16 3_circ_ag.17 3_circ_ag.18 3_circ_ag.19 3_circ_ag.20 3_circ_igg.21 AT3G23530_circ_g.1 AT3G23530_circ_g.2 AT3G23530_circ_g.3 AT3G23530_circ_g.4 AT3G23530_circ_g.5 AT3G23530_circ_g.6 AT3G23530_circ_g.7 AT3G23530_circ_g.8 AT3G23530_circ_g.9 AT3G23540_circ_g.1 AT3G23540_circ_g.2 AT3G23540_circ_g.3 AT3G23540_circ_g.4 AT3G23540_circ_g.5 AT3G23540_circ_g.6 AT3G23540_circ_g.7 AT3G23540_circ_g.8 AT3G23540_circ_g.9 AT3G23540_circ_g.10 AT3G23540_circ_g.11
Support reads 1/1
Tissues leaf;flower
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTGATCTTGGATTCGACGAGAAATTCTTAAGGACATGGGAATATTATTTCGACTACTGTGCA
GCTGGGTTCAAGACTCTTACCCTTAGAAACTACCAGatagttttctcacgcccagggaacgtcg
ctgcgttcggtgatgatgatccattccgcagttccactagaaaaaacaacattatatagatgaa
acaaaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAGTTTTCTCACGCCCAGGGAACGTCGCTGCGTTCGGTGATGATGATCCATTCCGCAGTTCCA
CTAGAAAAAACAACATTATATAGATGAAACAAAAGATTATCTTAGACGCTCGAAAATGTTCTGC
TTTCATGATTGATTATGCATTCTGTATAAACAGCTTTTCTCTGTCCAGACCATTATAAAGCAAA
AGATTATACATAACCTGAAATGTGTGTGAACATTTATTCAAGCTGTTATGGTGCAATGGTTCAC
TTCCATTGAAAAAAACTTTACTGCTGTCCAAGATTGAGTACTATGATGTAACTCAAGATCTCTG
TGAAAGGGCTAACACATGGACAAAACGGTCAATACTACACATAATTACATGAGACACATGGATG
CAAATACACTGGTATTAGTATTACACTATCTATTGAACAACTTAGATGTTTTAAATAAGTATAT
AACCATGCCTTTTTCCGCAAATCTCATTATAGACTTGAATTGAATAACTTATATCATGCATTTC
TGCAACATTGTAGATAGCTTTCTCACGTCCAAGGAACATAGTTTTTATTCGGTGAAGATGTGTG
ACAGGACTAAAATCACAGTCCATTTCTTTCTCTACCGCACTATTTCAATAAATATCTAAACCCA
TTTTCGGTTTGTTCATCCGGTCAAGCTTTGTAAAATTCAACCTTGGCCAGATGTTGGACCACAC
AAACCTTGTGTACACATGTGTCATTTGAAGAATATAATCAATAGTTTATCATCTACCTTATCTC
ATCTTTCTCCCTCTCTCCTCATTCTTGCTCGTCATCAATCATCATCATCCGAAACCTCAGATCT
CTAAGGTACTTATTTATTCTCAAATCACTTTTTAGGTTGTATTTTACCTAGGTTTGTTATTATT
TTCTCCGAGAATATAGAAAACTCTGGATAGGATTATTATTATTTTCTCTATCCTATGGTTTCAA
GATGATCCATTCCACAGCTTTGTGTTAACTAAAAAAACTAGCAATGTTAGATGAATCATTTCCA
ATCTGGAGTACTACTCCCATTTCTTGTGTTAATTTCCCCGAGAAACACATTAGACTATTATTTT
CTTGAAAATGTGTGAATTCACAACAAGATATTTTTTTATTTTAACTAAATTAAAAATAGAACAT
GTGAAAAACAAGAGATAATCAGATAGCGACCCCAACATCAGTTTTCACGTATGGATTTGATATA
TAACAGAACACAATGTGGCTTGTTTATGCTATAACTCGCTTATTCTTCAATCACTCTCCAATTT
CTTCATATTAGGCTTTTGTTTATCAAATTTATTCCCGTTTTTTGGAAAATATATAAATAATCAT
CAGAAGAAAAAAGACAAAGAAAAACCTACTTTTGGTAAATTCAGTCCAGCCAACTTTCACTTTC
CAAGTCTATTAATTGTGTGCCAAGTACAAGGTTTTTTTATTAGAATATAATTTTACATTTTTTC
AGGAAAAAAAAAAAAACACTGCTGACTACATTTATCTTCTTTTTTTTTTTTCATTTTCTTTCAA
ATATTTATTCATTGGTGTCTCGGTTCTTATATTAGGGTCTTTGCATTCTCCATCCTCCTATCAG
TACTCCCTCTTCTCTTTAGGGTATGAGTTTCATCAATAGCTCAGCATCTGAAAAACAACTACTC
TAATTTGGATCCATCACATAAAAACAACTACTCTAATTTGGATCCATCACATCCGCAAATATCC
ATAATAATATAAAATTACAGAAATAAAATGTGTCATATAATCTTTTTCAAACTAATATAAATAA
ATATGTTAGACATTTATTAAGGACATTCTCAAATATATCACACTTTTTATTATTATGATATTAT
ATATCTAAATATTATACATATTTGAAAACAAATTAATATATGAAAGCTGATCCGGACCAAATCT
TAAATTACGATATTTGGCTCCTAATTTCCAGAACTTCACATATCATTTTTATCAGAACAGATCG
GATATGGATATCATGACTTTTAATTCGAATAATTTTATAAGAACTATAATAAATTTTAATATTG
TTTTAGTTTGTATATATTATGTTTGTTTAAGATGTTCTTAATTAGGGTAAACTCTTGACACATA
GAATCTAAAGCAATATAATTAGTTATCTTTTCATGGTTTTTAATTGTCTGATCCATGAAGACAG
ACTAAAAGGCAATGATCACTCCACATTGAATATGTAAATAACTCTTCTTCTCTTTTTGTTATCT
TTAGGCCGGGATGGTAATTGCACGAGGTTTGTTAGGGATACAAACAACTCTTGTGAAAAATATG
CAACATATGGTATTTTCCCTAACCGAAGCAGGGGCTCGACTTTTCGTTACCAGATTCTTTAGAC
AATTCATATCGATCGGTTGTGTAACGTGAGACTCACTTTATTTCCTCGATTCAAATAATATAAT
GTTACACATTAATACTTATGAACTGAACAGGATACTAGAAGGAGACACGATATTCATATTTGGG
GAAAATGAATCTACTTGTCCTTTGAAATCTATCCTCAAGATTCACAGTCCTCAGTTTTACTGGA
AGGTAACATATATACAAAGACAAAAAGAAAAGTTAAAATAGACTTTCTATAGCTCAAATAGAAC
TTGATTTTTTTTCTCTTAGGTTATGACACTAGCAGATTTAGGACTTGCAGATGCTTATATCAAT
GGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATCTGATTATGGTACATAATATAT
ACTTGTAGAAGCATAGGTACTTACTTCTTCGATTGTTCGAGTTATTTCTAATGGTTTTTATCTA
CAGATTCTCATTGCAAACAGAGACCTGAACTCACGAAAATCAAACCTTGCCAAGAAAAGGTAGA
ACCTTACAACTTTCTCCATAAAGAGTTTTACGCTTGGGATGCAAACTTTATTTCCTAAGCTATC
ACTTGTGTTTTTTTACCTTACAGGGGATGGTGGACACCAGTGTTTCTAACTGCCAGCTTAGCAT
CTGCAACATATTATCTAAAGCATGTCTGTAGACAGAACACTTTAACTCAAGCTCGAAGGAACGT
TTCTAGTCATTATGACCTTGTACGTGCTTGAGAATTAATTTTCTTGTTTATAATCGGATTTCTG
TTAATAGAGCAACGAGTTTTTCGGTCTCTTCATGGATGATACCATGATGTACTCCTCTGCAGTA
TTCAAGGTGACCATTAAAAACTTCCAGAGTATTTTTCTCTTTTTCAGTTTCTCTTACTTTATTA
TGATCCTGACATCAACCTTTCGCCATTTTTCATGTTTATATAGTCAGAAAATGAGAATCTTAGA
ACTGCACAGATGAGAAAAATACATCTTTTAATCGAAAAGGTAAGATCTATAGGAGATCATTTTC
TATATTTTTAACAAGAACCACTGTTTTTTCTTTGTTTTTTAGTGATCAAAATTTGGAAATTTCA
GGCGAGGATAAAGAAGAACCATATGAGGTTTTAGAGATAGGATGCGGATGGGGAACTTTAGCCA
TAGAAGTTGTGAAAAGAACTGGATGCAAATACACTGGCTTTACTCTATCTATTGAACAACTTAA
ATATGTAGAAGAGAAAGTTAAAGAAGCTGGACTTCAGGTTTGCATAATCCATTTCTGTTTATGA
TCTCCAAGGCTCTGACTAACATTTTAACTTCTTAATCATAGGAGCGGATTACGTTTAAGCTCTG
CGATTATCGCCAACTATGTGATACTCAAAAATATGACAGAATTATATCTTGGTAATATATCTCT
CTTGTATATAATATTTATTATGTCTTATGAGTCTATGACATAACATTTTGGATGTTTCAGTGAG
ATGATAGAACATGTTGGCCACAAATTCATGGAGACATTTTTCAGTCACTGTGAAGCTGCGCTTG
CAGAAGACGGCATTTTTGTCCTCCAGGTAACACCTGCATGTATCTTCAATCTCATGTTTGCACA
ACAATTGATAGTTGTTAATGTTTAACAATTACTAACAGTTCACAGCAATACCTGAGGAGCTTTA
CGACGAGAGCAGACTAACTTCAGGTTTCATAACGGAATACATATTCCCTGGTGGATGTCTTCCT
TCTTTAGCCAGAGTTACTTCAGCCATGGCCTCTTCCTCTAGGCTATGGTAAAGTCTTTTCTTTA
TCAAAGTTTAGCTTCAAATGCAATTCCTCTGTTTTCTCTTCCTCCAATCTATCTATCTAACACC
GGAGAAATACAGCATTGAAAACGTTGAGAACATTGGGATTCATTACTATCCTACGTTGAGATAC
TGGAGGAAGAACTTATTGGAGAGACAAAAGTAAGATGTCATAATAAAAACTTTTCCTCTGTTGT
GCTTTTCAGGATTTAGTATGTTTGTTCATACGTCCAACAAAACTAACTATTATCTGCGCAGACA
AATCATTGATCTTGGATTCGACGAGAAATTCTTAAGGACATGGGAATATTATTTCGACTACTGT
GCAGCTGGGTTCAAGACTCTTACCCTTAGAAACTACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.517400933
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020