Detail information of 3_circ_ag.7


General Information
CircRNA Name 3_circ_ag.7
ID in PlantcircBase ath_circ_023367
Alias NA
Organism Arabidpsis thaliana
Position chr3: 8417641-8422176  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 AT3G23470_circ_g.1 3_circ_ag.2 3_circ_ag.3 AT3G23470_circ_g.4 AT3G23470_circ_g.5 AT3G23470_circ_g.6 3_circ_ag.8 3_circ_ag.9 AT3G23480_circ_g.1 AT3G23480_circ_g.2 AT3G23480_circ_g.3 AT3G23490_circ_g.1 3_circ_ag.2 3_circ_ag.3 AT3G23510_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 3_circ_ag.8 3_circ_ag.9 3_circ_ag.10 3_circ_ag.11 3_circ_ag.12 3_circ_ag.13 AT3G23510_circ_g.14 3_circ_ag.15 3_circ_ag.16 3_circ_ag.17 3_circ_ag.18 3_circ_ag.19 3_circ_ag.20 3_circ_igg.21 AT3G23530_circ_g.1 AT3G23530_circ_g.2 AT3G23530_circ_g.3 AT3G23530_circ_g.4 AT3G23530_circ_g.5 AT3G23530_circ_g.6 AT3G23530_circ_g.7 AT3G23530_circ_g.8 AT3G23530_circ_g.9 AT3G23540_circ_g.1 AT3G23540_circ_g.2 AT3G23540_circ_g.3 AT3G23540_circ_g.4 AT3G23540_circ_g.5 AT3G23540_circ_g.6 AT3G23540_circ_g.7 AT3G23540_circ_g.8 AT3G23540_circ_g.9 AT3G23540_circ_g.10 AT3G23540_circ_g.11
Support reads 85
Tissues root, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTAACTTCAGGTTTCATAACGGAATACATATTCCCTGGTGGATGTCTTCCTTCTTTAGCCAG
AGTTACTTCAGCCATGGCCTCTTCCTCTAGGCTATGcattgaaaacgttgagaacattgggatc
cattactaccacacgttgagatgttggaggaagaactttttggagagacaaaagtaagatgaaa
atattaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTGAAAACGTTGAGAACATTGGGATCCATTACTACCACACGTTGAGATGTTGGAGGAAGAAC
TTTTTGGAGAGACAAAAGTAAGATGAAAATATTAAAAACCTTTCCTCTGTTTTGCTTTTCAGGA
ATCTGTATGTTTTTTCATATGTCCAATAAAACTAACTATTATCTGCGCAGACAAATCATCGATC
TTGGATTCGACGATAAATTCATAAGGACATGGGAATATTATTTCGACTATTGTGCAGCTGGTTT
CAAGACTCTTACCCTTAGAAGCTACCAGGTAAAACACACACTCGAGCACATTAATAGAAACATA
AGCATGTCGTTTTCCTCAAGTCTCATTTTAGACTTGCTTTGAATAACTTATATGCATTCATGTA
ACATTGCAGATAGTTTTCTCACGCCCAGGGAACGTCGCTGCGTTCGGTGATGATGATCCATTCC
GCAGTTCCACTAGAAAAAACAACATTATATAGATGAAACAAAAGATTATCTTAGACGCTCGAAA
ATGTTCTGCTTTCATGATTGATTATGCATTCTGTATAAACAGCTTTTCTCTGTCCAGACCATTA
TAAAGCAAAAGATTATACATAACCTGAAATGTGTGTGAACATTTATTCAAGCTGTTATGGTGCA
ATGGTTCACTTCCATTGAAAAAAACTTTACTGCTGTCCAAGATTGAGTACTATGATGTAACTCA
AGATCTCTGTGAAAGGGCTAACACATGGACAAAACGGTCAATACTACACATAATTACATGAGAC
ACATGGATGCAAATACACTGGTATTAGTATTACACTATCTATTGAACAACTTAGATGTTTTAAA
TAAGTATATAACCATGCCTTTTTCCGCAAATCTCATTATAGACTTGAATTGAATAACTTATATC
ATGCATTTCTGCAACATTGTAGATAGCTTTCTCACGTCCAAGGAACATAGTTTTTATTCGGTGA
AGATGTGTGACAGGACTAAAATCACAGTCCATTTCTTTCTCTACCGCACTATTTCAATAAATAT
CTAAACCCATTTTCGGTTTGTTCATCCGGTCAAGCTTTGTAAAATTCAACCTTGGCCAGATGTT
GGACCACACAAACCTTGTGTACACATGTGTCATTTGAAGAATATAATCAATAGTTTATCATCTA
CCTTATCTCATCTTTCTCCCTCTCTCCTCATTCTTGCTCGTCATCAATCATCATCATCCGAAAC
CTCAGATCTCTAAGGTACTTATTTATTCTCAAATCACTTTTTAGGTTGTATTTTACCTAGGTTT
GTTATTATTTTCTCCGAGAATATAGAAAACTCTGGATAGGATTATTATTATTTTCTCTATCCTA
TGGTTTCAAGATGATCCATTCCACAGCTTTGTGTTAACTAAAAAAACTAGCAATGTTAGATGAA
TCATTTCCAATCTGGAGTACTACTCCCATTTCTTGTGTTAATTTCCCCGAGAAACACATTAGAC
TATTATTTTCTTGAAAATGTGTGAATTCACAACAAGATATTTTTTTATTTTAACTAAATTAAAA
ATAGAACATGTGAAAAACAAGAGATAATCAGATAGCGACCCCAACATCAGTTTTCACGTATGGA
TTTGATATATAACAGAACACAATGTGGCTTGTTTATGCTATAACTCGCTTATTCTTCAATCACT
CTCCAATTTCTTCATATTAGGCTTTTGTTTATCAAATTTATTCCCGTTTTTTGGAAAATATATA
AATAATCATCAGAAGAAAAAAGACAAAGAAAAACCTACTTTTGGTAAATTCAGTCCAGCCAACT
TTCACTTTCCAAGTCTATTAATTGTGTGCCAAGTACAAGGTTTTTTTATTAGAATATAATTTTA
CATTTTTTCAGGAAAAAAAAAAAAACACTGCTGACTACATTTATCTTCTTTTTTTTTTTTCATT
TTCTTTCAAATATTTATTCATTGGTGTCTCGGTTCTTATATTAGGGTCTTTGCATTCTCCATCC
TCCTATCAGTACTCCCTCTTCTCTTTAGGGTATGAGTTTCATCAATAGCTCAGCATCTGAAAAA
CAACTACTCTAATTTGGATCCATCACATAAAAACAACTACTCTAATTTGGATCCATCACATCCG
CAAATATCCATAATAATATAAAATTACAGAAATAAAATGTGTCATATAATCTTTTTCAAACTAA
TATAAATAAATATGTTAGACATTTATTAAGGACATTCTCAAATATATCACACTTTTTATTATTA
TGATATTATATATCTAAATATTATACATATTTGAAAACAAATTAATATATGAAAGCTGATCCGG
ACCAAATCTTAAATTACGATATTTGGCTCCTAATTTCCAGAACTTCACATATCATTTTTATCAG
AACAGATCGGATATGGATATCATGACTTTTAATTCGAATAATTTTATAAGAACTATAATAAATT
TTAATATTGTTTTAGTTTGTATATATTATGTTTGTTTAAGATGTTCTTAATTAGGGTAAACTCT
TGACACATAGAATCTAAAGCAATATAATTAGTTATCTTTTCATGGTTTTTAATTGTCTGATCCA
TGAAGACAGACTAAAAGGCAATGATCACTCCACATTGAATATGTAAATAACTCTTCTTCTCTTT
TTGTTATCTTTAGGCCGGGATGGTAATTGCACGAGGTTTGTTAGGGATACAAACAACTCTTGTG
AAAAATATGCAACATATGGTATTTTCCCTAACCGAAGCAGGGGCTCGACTTTTCGTTACCAGAT
TCTTTAGACAATTCATATCGATCGGTTGTGTAACGTGAGACTCACTTTATTTCCTCGATTCAAA
TAATATAATGTTACACATTAATACTTATGAACTGAACAGGATACTAGAAGGAGACACGATATTC
ATATTTGGGGAAAATGAATCTACTTGTCCTTTGAAATCTATCCTCAAGATTCACAGTCCTCAGT
TTTACTGGAAGGTAACATATATACAAAGACAAAAAGAAAAGTTAAAATAGACTTTCTATAGCTC
AAATAGAACTTGATTTTTTTTCTCTTAGGTTATGACACTAGCAGATTTAGGACTTGCAGATGCT
TATATCAATGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATCTGATTATGGTAC
ATAATATATACTTGTAGAAGCATAGGTACTTACTTCTTCGATTGTTCGAGTTATTTCTAATGGT
TTTTATCTACAGATTCTCATTGCAAACAGAGACCTGAACTCACGAAAATCAAACCTTGCCAAGA
AAAGGTAGAACCTTACAACTTTCTCCATAAAGAGTTTTACGCTTGGGATGCAAACTTTATTTCC
TAAGCTATCACTTGTGTTTTTTTACCTTACAGGGGATGGTGGACACCAGTGTTTCTAACTGCCA
GCTTAGCATCTGCAACATATTATCTAAAGCATGTCTGTAGACAGAACACTTTAACTCAAGCTCG
AAGGAACGTTTCTAGTCATTATGACCTTGTACGTGCTTGAGAATTAATTTTCTTGTTTATAATC
GGATTTCTGTTAATAGAGCAACGAGTTTTTCGGTCTCTTCATGGATGATACCATGATGTACTCC
TCTGCAGTATTCAAGGTGACCATTAAAAACTTCCAGAGTATTTTTCTCTTTTTCAGTTTCTCTT
ACTTTATTATGATCCTGACATCAACCTTTCGCCATTTTTCATGTTTATATAGTCAGAAAATGAG
AATCTTAGAACTGCACAGATGAGAAAAATACATCTTTTAATCGAAAAGGTAAGATCTATAGGAG
ATCATTTTCTATATTTTTAACAAGAACCACTGTTTTTTCTTTGTTTTTTAGTGATCAAAATTTG
GAAATTTCAGGCGAGGATAAAGAAGAACCATATGAGGTTTTAGAGATAGGATGCGGATGGGGAA
CTTTAGCCATAGAAGTTGTGAAAAGAACTGGATGCAAATACACTGGCTTTACTCTATCTATTGA
ACAACTTAAATATGTAGAAGAGAAAGTTAAAGAAGCTGGACTTCAGGTTTGCATAATCCATTTC
TGTTTATGATCTCCAAGGCTCTGACTAACATTTTAACTTCTTAATCATAGGAGCGGATTACGTT
TAAGCTCTGCGATTATCGCCAACTATGTGATACTCAAAAATATGACAGAATTATATCTTGGTAA
TATATCTCTCTTGTATATAATATTTATTATGTCTTATGAGTCTATGACATAACATTTTGGATGT
TTCAGTGAGATGATAGAACATGTTGGCCACAAATTCATGGAGACATTTTTCAGTCACTGTGAAG
CTGCGCTTGCAGAAGACGGCATTTTTGTCCTCCAGGTAACACCTGCATGTATCTTCAATCTCAT
GTTTGCACAACAATTGATAGTTGTTAATGTTTAACAATTACTAACAGTTCACAGCAATACCTGA
GGAGCTTTACGACGAGAGCAGACTAACTTCAGGTTTCATAACGGAATACATATTCCCTGGTGGA
TGTCTTCCTTCTTTAGCCAGAGTTACTTCAGCCATGGCCTCTTCCTCTAGGCTATG
Conservation Information
Conserved circRNAs NA
PMCS 0.60609945
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017