Detail information of 3_circ_ag.2


General Information
CircRNA Name 3_circ_ag.2
ID in PlantcircBase ath_circ_023362
Alias NA
Organism Arabidpsis thaliana
Position chr3: 8416679-8421239  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 AT3G23470_circ_g.1 3_circ_ag.3 AT3G23470_circ_g.4 AT3G23470_circ_g.5 AT3G23470_circ_g.6 3_circ_ag.7 3_circ_ag.8 3_circ_ag.9 AT3G23480_circ_g.1 AT3G23480_circ_g.2 AT3G23480_circ_g.3 AT3G23490_circ_g.1 3_circ_ag.2 3_circ_ag.3 AT3G23510_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 3_circ_ag.8 3_circ_ag.9 3_circ_ag.10 3_circ_ag.11 3_circ_ag.12 3_circ_ag.13 AT3G23510_circ_g.14 3_circ_ag.15 3_circ_ag.16 3_circ_ag.17 3_circ_ag.18 3_circ_ag.19 3_circ_ag.20 3_circ_igg.21 AT3G23530_circ_g.1 AT3G23530_circ_g.2 AT3G23530_circ_g.3 AT3G23530_circ_g.4 AT3G23530_circ_g.5 AT3G23530_circ_g.6 AT3G23530_circ_g.7 AT3G23530_circ_g.8 AT3G23530_circ_g.9 AT3G23540_circ_g.1 AT3G23540_circ_g.2 AT3G23540_circ_g.3 AT3G23540_circ_g.4 AT3G23540_circ_g.5 AT3G23540_circ_g.6 AT3G23540_circ_g.7 AT3G23540_circ_g.8 AT3G23540_circ_g.9 AT3G23540_circ_g.10 AT3G23540_circ_g.11
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAATTTTCTTGTTTATAATCGGATTTCTGTTAATAGAGCAACGAGTTTTTCGGTCTCTTCATG
GATGATACCATGATGTACTCCTCTGCAGTATTCAAGtcagaaaatgaggatcctagaactgcac
agatgagaaaaatatctcttttaattgaaaaggtaaggtctacaggagacattttcttgattta
taacaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCAGAAAATGAGGATCCTAGAACTGCACAGATGAGAAAAATATCTCTTTTAATTGAAAAGGTAA
GGTCTACAGGAGACATTTTCTTGATTTATAACAAGAAGTCAAGAGTACACGTATTTTTTATTTG
TTCTTTAATGATCAATTGTGGGAAATTTCAGGCGAGGATAGAGAAGAACCATGAGGTCTTAGAG
ATGGGATGCGGATGGGGAACTTTTGCCATAGAAGTTGTGAAAAGAACTGGATGCAAATACACTG
GCATTACTCTTTCTATTGAACAGCTTAAATATGCAAAAGCAAAAGTGAAAGAAGCTGGACTTCA
GGTTCTTGTCTAATAAACTTTTCTAATACCATGAATATTGTGTGCCTTATGATGAACAATATTC
CTTTTGAATCACCAGGGTCGGATTACGTTTATGCTCTGCGATTATCGCCAACTATCTGATGCTC
GCAAATATGACAGAATTATAGCTTGGTAAAACTCTTTTTTTGTCCATCTTTGTTAAATTACCTT
GTAATCTGTTTATGACATAACATTTCTGGATGTTTCAGTGAGATGATAGAAGCGGTTGGCCACG
AGTTTATGGATAAGTTTTTCAGTTGTTGTGAAGATGCGCTTGCAGAAAACGGCATTTTTGTCCT
ACAGGTAACACTTGCTTCTTCCTCACGGTTCCCTCATCATTATATTGCAAAATCATTGATCGTT
TTAATGGTTAACTGTACAACAGTTCACAGCGATACCCGAGGCTCTTTACGACGAGAGCAGACTA
ACTTCAGGTTTCATAACGGAATACATATTCCCTGGTGGATGTCTTCCTTCTTTAGCCAGAGTTA
CTTCAGCCATGGCCTCTTCCTCTAGGCTATGGTAAAATCTTTTCTTTATCAAATTTTAGCTTCA
AATGCAATTCTCTGCTTTCTCCTTCTCCGACGGCCTACCTAGTATCTAACACCGGGTCAAATAC
AGCATTGAAAACGTTGAGAACATTGGGATCCATTACTACCACACGTTGAGATGTTGGAGGAAGA
ACTTTTTGGAGAGACAAAAGTAAGATGAAAATATTAAAAACCTTTCCTCTGTTTTGCTTTTCAG
GAATCTGTATGTTTTTTCATATGTCCAATAAAACTAACTATTATCTGCGCAGACAAATCATCGA
TCTTGGATTCGACGATAAATTCATAAGGACATGGGAATATTATTTCGACTATTGTGCAGCTGGT
TTCAAGACTCTTACCCTTAGAAGCTACCAGGTAAAACACACACTCGAGCACATTAATAGAAACA
TAAGCATGTCGTTTTCCTCAAGTCTCATTTTAGACTTGCTTTGAATAACTTATATGCATTCATG
TAACATTGCAGATAGTTTTCTCACGCCCAGGGAACGTCGCTGCGTTCGGTGATGATGATCCATT
CCGCAGTTCCACTAGAAAAAACAACATTATATAGATGAAACAAAAGATTATCTTAGACGCTCGA
AAATGTTCTGCTTTCATGATTGATTATGCATTCTGTATAAACAGCTTTTCTCTGTCCAGACCAT
TATAAAGCAAAAGATTATACATAACCTGAAATGTGTGTGAACATTTATTCAAGCTGTTATGGTG
CAATGGTTCACTTCCATTGAAAAAAACTTTACTGCTGTCCAAGATTGAGTACTATGATGTAACT
CAAGATCTCTGTGAAAGGGCTAACACATGGACAAAACGGTCAATACTACACATAATTACATGAG
ACACATGGATGCAAATACACTGGTATTAGTATTACACTATCTATTGAACAACTTAGATGTTTTA
AATAAGTATATAACCATGCCTTTTTCCGCAAATCTCATTATAGACTTGAATTGAATAACTTATA
TCATGCATTTCTGCAACATTGTAGATAGCTTTCTCACGTCCAAGGAACATAGTTTTTATTCGGT
GAAGATGTGTGACAGGACTAAAATCACAGTCCATTTCTTTCTCTACCGCACTATTTCAATAAAT
ATCTAAACCCATTTTCGGTTTGTTCATCCGGTCAAGCTTTGTAAAATTCAACCTTGGCCAGATG
TTGGACCACACAAACCTTGTGTACACATGTGTCATTTGAAGAATATAATCAATAGTTTATCATC
TACCTTATCTCATCTTTCTCCCTCTCTCCTCATTCTTGCTCGTCATCAATCATCATCATCCGAA
ACCTCAGATCTCTAAGGTACTTATTTATTCTCAAATCACTTTTTAGGTTGTATTTTACCTAGGT
TTGTTATTATTTTCTCCGAGAATATAGAAAACTCTGGATAGGATTATTATTATTTTCTCTATCC
TATGGTTTCAAGATGATCCATTCCACAGCTTTGTGTTAACTAAAAAAACTAGCAATGTTAGATG
AATCATTTCCAATCTGGAGTACTACTCCCATTTCTTGTGTTAATTTCCCCGAGAAACACATTAG
ACTATTATTTTCTTGAAAATGTGTGAATTCACAACAAGATATTTTTTTATTTTAACTAAATTAA
AAATAGAACATGTGAAAAACAAGAGATAATCAGATAGCGACCCCAACATCAGTTTTCACGTATG
GATTTGATATATAACAGAACACAATGTGGCTTGTTTATGCTATAACTCGCTTATTCTTCAATCA
CTCTCCAATTTCTTCATATTAGGCTTTTGTTTATCAAATTTATTCCCGTTTTTTGGAAAATATA
TAAATAATCATCAGAAGAAAAAAGACAAAGAAAAACCTACTTTTGGTAAATTCAGTCCAGCCAA
CTTTCACTTTCCAAGTCTATTAATTGTGTGCCAAGTACAAGGTTTTTTTATTAGAATATAATTT
TACATTTTTTCAGGAAAAAAAAAAAAACACTGCTGACTACATTTATCTTCTTTTTTTTTTTTCA
TTTTCTTTCAAATATTTATTCATTGGTGTCTCGGTTCTTATATTAGGGTCTTTGCATTCTCCAT
CCTCCTATCAGTACTCCCTCTTCTCTTTAGGGTATGAGTTTCATCAATAGCTCAGCATCTGAAA
AACAACTACTCTAATTTGGATCCATCACATAAAAACAACTACTCTAATTTGGATCCATCACATC
CGCAAATATCCATAATAATATAAAATTACAGAAATAAAATGTGTCATATAATCTTTTTCAAACT
AATATAAATAAATATGTTAGACATTTATTAAGGACATTCTCAAATATATCACACTTTTTATTAT
TATGATATTATATATCTAAATATTATACATATTTGAAAACAAATTAATATATGAAAGCTGATCC
GGACCAAATCTTAAATTACGATATTTGGCTCCTAATTTCCAGAACTTCACATATCATTTTTATC
AGAACAGATCGGATATGGATATCATGACTTTTAATTCGAATAATTTTATAAGAACTATAATAAA
TTTTAATATTGTTTTAGTTTGTATATATTATGTTTGTTTAAGATGTTCTTAATTAGGGTAAACT
CTTGACACATAGAATCTAAAGCAATATAATTAGTTATCTTTTCATGGTTTTTAATTGTCTGATC
CATGAAGACAGACTAAAAGGCAATGATCACTCCACATTGAATATGTAAATAACTCTTCTTCTCT
TTTTGTTATCTTTAGGCCGGGATGGTAATTGCACGAGGTTTGTTAGGGATACAAACAACTCTTG
TGAAAAATATGCAACATATGGTATTTTCCCTAACCGAAGCAGGGGCTCGACTTTTCGTTACCAG
ATTCTTTAGACAATTCATATCGATCGGTTGTGTAACGTGAGACTCACTTTATTTCCTCGATTCA
AATAATATAATGTTACACATTAATACTTATGAACTGAACAGGATACTAGAAGGAGACACGATAT
TCATATTTGGGGAAAATGAATCTACTTGTCCTTTGAAATCTATCCTCAAGATTCACAGTCCTCA
GTTTTACTGGAAGGTAACATATATACAAAGACAAAAAGAAAAGTTAAAATAGACTTTCTATAGC
TCAAATAGAACTTGATTTTTTTTCTCTTAGGTTATGACACTAGCAGATTTAGGACTTGCAGATG
CTTATATCAATGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATCTGATTATGGT
ACATAATATATACTTGTAGAAGCATAGGTACTTACTTCTTCGATTGTTCGAGTTATTTCTAATG
GTTTTTATCTACAGATTCTCATTGCAAACAGAGACCTGAACTCACGAAAATCAAACCTTGCCAA
GAAAAGGTAGAACCTTACAACTTTCTCCATAAAGAGTTTTACGCTTGGGATGCAAACTTTATTT
CCTAAGCTATCACTTGTGTTTTTTTACCTTACAGGGGATGGTGGACACCAGTGTTTCTAACTGC
CAGCTTAGCATCTGCAACATATTATCTAAAGCATGTCTGTAGACAGAACACTTTAACTCAAGCT
CGAAGGAACGTTTCTAGTCATTATGACCTTGTACGTGCTTGAGAATTAATTTTCTTGTTTATAA
TCGGATTTCTGTTAATAGAGCAACGAGTTTTTCGGTCTCTTCATGGATGATACCATGATGTACT
CCTCTGCAGTATTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.416985472
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017