Plant Circular RNA Database

Detail information of Os02g0452500_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0452500_circ_g.2
					
						ID in PlantcircBase
						osa_circ_014571
					
						Alias
						Os_ciR3740
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 14944171-14946943  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os02g0452500						
					
						Parent gene annotation
						
							Similar to SNARE-interacting protein KEULE. (Os02t0452500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0452500_circ_g.1 Os02g0452500_circ_g.3 Os02g0452500_circ_g.4 Os02g0452500_circ_g.5 Os02g0452500_circ_g.6 Os02g0452500_circ_g.7 Os02g0452500_circ_g.8 Os02g0452500_circ_g.9 Os02g0452500_circ_g.10 Os02g0452500_circ_g.11 Os02g0452500_circ_g.12 Os02g0452500_circ_g.13 Os02g0452500_circ_g.14 Os02g0452500_circ_g.15 Os02g0452500_circ_g.16 Os02g0452500_circ_g.17 Os02g0452500_circ_g.18 Os02g0452500_circ_g.19 Os02g0452500_circ_g.20 Os02g0452500_circ_g.21 Os02g0452500_circ_g.22 Os02g0452500_circ_g.23 Os02g0452500_circ_g.24 Os02g0452500_circ_g.25 Os02g0452500_circ_g.26 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0452500-01:5

General Information
CircRNA Name	Os02g0452500_circ_g.2
ID in PlantcircBase	osa_circ_014571
Alias	Os_ciR3740
Organism	Oryza sativa
Position	chr2: 14944171-14946943 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Os02g0452500
Parent gene annotation	Similar to SNARE-interacting protein KEULE. (Os02t0452500-01)
Parent gene strand	-
Alternative splicing	Os02g0452500_circ_g.1 Os02g0452500_circ_g.3 Os02g0452500_circ_g.4 Os02g0452500_circ_g.5 Os02g0452500_circ_g.6 Os02g0452500_circ_g.7 Os02g0452500_circ_g.8 Os02g0452500_circ_g.9 Os02g0452500_circ_g.10 Os02g0452500_circ_g.11 Os02g0452500_circ_g.12 Os02g0452500_circ_g.13 Os02g0452500_circ_g.14 Os02g0452500_circ_g.15 Os02g0452500_circ_g.16 Os02g0452500_circ_g.17 Os02g0452500_circ_g.18 Os02g0452500_circ_g.19 Os02g0452500_circ_g.20 Os02g0452500_circ_g.21 Os02g0452500_circ_g.22 Os02g0452500_circ_g.23 Os02g0452500_circ_g.24 Os02g0452500_circ_g.25 Os02g0452500_circ_g.26
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0452500-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGATTAATTCTTTAGTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCTC
GAAGACCTTGCTCCCTTATTATGCTATTGAGTTTACcttgaatacccatcatcagagccacgtg
gccgagcccatgtaccacctgtccgtctggatctcatagaatgagctggttggtgagctgggct
agttctga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 613
Transcript exons: 14944171-14944373,14945579-14945656,14945753-14945869,14
946623-14946718,14946825-14946943
CTTGAATACCCATCATCAGAGCCACGTGGCCGAGCCCATGTACCACCTGTCCGTCTGGATCTCA
TAGAATGAGCTGGTTGGTGAGCTGGGCTAGTTCTGACTGAGCTGCTCATTGGCAGACCGTGGAA
ACTTGGGCTAGGGTCGTTCATGCAATAGTATTCGTCTTTTGGTAATTCTCCCTTGCTAAGCTTC
TCAATCAAGTCCTCTAGAACAGGATAAAATCGGGAAAGTGCCCATGTAGATTCTTCCCCAGTTC
GCTCCTTTCTAAGTCCATGCTTCTTCTTGTGAACATCAAATTTAAACGTAAAACCTCCTCCCGA
GGACTTTTTGGTGTCAGGGCCACATAAGCAACGCATATTACTCACAGCAATCATGTCATCAGTG
GATAATCCTGCCAACTGCATCAATTTTTCACCCTTGTCACTTTCGAACTTGTCTGGGTTGATTG
CTGCATAGATCATCAGCAAACGCAACTTGTTTTCACGACTTACACCCAATTGTGTCCTCAAAAA
ATTGATTAATTCTTTAGTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCT
CGAAGACCTTGCTCCCTTATTATGCTATTGAGTTTAC
						
					

						Genomic sequence
						
							CTTGAATACCCATCATCAGAGCCACGTGGCCGAGCCCATGTACCACCTGTCCGTCTGGATCTCA
TAGAATGAGCTGGTTGGTGAGCTGGGCTAGTTCTGACTGAGCTGCTCATTGGCAGACCGTGGAA
ACTTGGGCTAGGGTCGTTCATGCAATAGTATTCGTCTTTTGGTAATTCTCCCTTGCTAAGCTTC
TCAATCAAGTCCTGTATAAAAGGTACAAGTTAACTATCGTATATTTTAGTCAAATGAAGGCAAA
ACAAAATATATGCATTAGTACATCCTCGCTTTGGAGACTATGCCAATATCCAAGATGCCTATTA
TTTGTGACTTAATGCATCTTGTTAGGGGCATCATTAAGTATCATCGACAGAGACCAGATGATTT
CCCTAGTTGTCAAAGTTATATTTCAGAGACTATGGCAATATCCAGGGTAAATATATGGTGGAAA
CCCCAACTTAGGTGAAAACCCATGTAAACCTCAACCAAAAGGTCATCTGAATTCAACAAAAAAG
AACCACACATGTAGATGAGATGATACTACACAACCATGTAAAAAATCTTGTCCAAACGAAGTCA
AGTTTGGACAAGATATTTTACATGGTTGTGTAGAATTCTCATCTACATGTGTGATTCTTTTGGT
AGATTTAGATGACATTTTGGTCAATGTTTACACCCAGAAAGTTAATAATGAGATCATCATTTCA
GGAAATGATACGGAACTACATAGTGATATTGATCCGGAAGAAGCTCAACAGGCACTTGAAATAG
CCGAAGCTAACATGAGTAGAACTGAGGGTACGAAAGAATTGGTTGAAGCGAAGCTAGCTCCCAG
ACGAACTAGGATACGAGTCAAGGCTGTTAATTGGATTCCCCCATCTAATTGAAGACAACCCAAC
GGTTTAGTTGATACAAAGAAAAAGGGAAGAGGGTAGCGAAGCGAAGTAGGTCCAAAGCTATCTA
GTAATTTTTCTACCTACCTACCTACCTACCTACTATTGGATTTGAATCAATGACTCAATTCAAG
CAATACTTCAACCACTGAGTTAAGCACGCAAGAGTTTTCACCTAAGTAGAGTTTCCACCACATA
TTTACCCCAATATCCAAGACTTCTTATTTGTGACTACAGGTATCTTGTCAGGCGCATCCTTTCT
GAAAAGTACTAATCAGACATGATCATTCCTACAAGTAATATCAAAGCCATTCTCCTTATATGTA
TGTCTAGCTTCCCTGGTGCAATCACTGCAATCCTGGTCGTGCCTTCAGGATGCACCACCAGGGT
CACAGGGAACGACAGCCCATACAGAAATTCTATCCACACCAAAATTTATACGGAGAGGAAAATA
TCGATGAAAACTATTCAAAAAAAATTGCAGATATCACTATAATATTGCTCTAATATATTTATAC
CTCTAGAACAGGATAAAATCGGGAAAGTGCCCATGTAGATTCTTCCCCAGTTCGCTCCTTTCTA
AGTCCATGCTTCTTCTGTTATCAGTAGGAATCAATTAATACATCATGAGATCAGGTTGGTAGCA
GATAAATGTTCAGAAAGAACCAAAAAGAAAGCAATATTTCGTTTACCTTGTGAACATCAAATTT
AAACGTAAAACCTCCTCCCGAGGACTTTTTGGTGTCAGGGCCACATAAGCAACGCATATTACTC
ACAGCAATCATGTCATCAGTGGATAATCCTGCCAACTGTTAGCAAGCGAAATTTCTTACTGATT
CCTGGCCAAGCATATACTCAAATCCAAATAATGTCCAAAATGGGCTCCTATCAACAATTCTGCA
CAGTTGCTTTACGAATTACTCCCTCCATTCGAAATTGATCTACATATAATTTTTTTGAGGTTAT
TCCTAAATGATCTACATATTTGTGTTCATTTATTAAGTCTATTCGTTATTTGTGCATTGGAGTA
AATGGACATTGATGCATGAATCCATGCACACAAGTATTTATAACCCACATGCAATATCTTGATT
TGCTATTGGCTAGGAAATAGTGGGGATGGTGCATGCATTGAGTTTGTTGCTAGAGTAAATATAG
TATGAGAGAGTTATTAGCTTTTCTTGGTCTTGGTGTACCTATGAAATATGTAGATCAATTTGGA
ATGGAGGGAGTAAAACACTATGTCATATTGTTCACCTGTGTTACACCAGATATTTAATGCCAGC
ATAGAAGTCACGCTTATCCAATATGAAAAGAAACTGCATGTTTCATTCATGCACGTTTCATGTA
TTCAATTATTATCGCATTGATGATAGAGAGTAAAGGGTAGACATACTTGGTGATATTTCATGAA
AAGAAAATTTACAATAAAGCAAAAGGGAAACAGTGGAAGGTGAAAAACAACAACTTATCTAGCC
AAAAAGTTGCACAGAAAAGTATACAGATTAAGCATAAAACATCTTGGGTTTGTTGAGTACGAAT
AGAAAAACAGAAAATTTTACCTGCATCAATTTTTCACCCTTGTCACTTTCGAACTTGTCTGGGT
TGATTGCTGCATAGATCATCAGCAAACGCAACTTGTTTTCACGACTTACACCCTGCATTAAGTA
GAGTAAACAATGTCATTATTAAGTCAGTAATATCAAAACACAATGTTGAAGAACAACCAATGTC
ATTCTAAAAAGTAATTCAAATATTAAATACCAATTGTGTCCTCAAAAAATTGATTAATTCTTTA
GTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCTCGAAGACCTTGCTCCC
TTATTATGCTATTGAGTTTAC
						
					

			
		

Sequences
Splice junction sequence	TTGATTAATTCTTTAGTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCTC GAAGACCTTGCTCCCTTATTATGCTATTGAGTTTACcttgaatacccatcatcagagccacgtg gccgagcccatgtaccacctgtccgtctggatctcatagaatgagctggttggtgagctgggct agttctga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 613 Transcript exons: 14944171-14944373,14945579-14945656,14945753-14945869,14 946623-14946718,14946825-14946943 CTTGAATACCCATCATCAGAGCCACGTGGCCGAGCCCATGTACCACCTGTCCGTCTGGATCTCA TAGAATGAGCTGGTTGGTGAGCTGGGCTAGTTCTGACTGAGCTGCTCATTGGCAGACCGTGGAA ACTTGGGCTAGGGTCGTTCATGCAATAGTATTCGTCTTTTGGTAATTCTCCCTTGCTAAGCTTC TCAATCAAGTCCTCTAGAACAGGATAAAATCGGGAAAGTGCCCATGTAGATTCTTCCCCAGTTC GCTCCTTTCTAAGTCCATGCTTCTTCTTGTGAACATCAAATTTAAACGTAAAACCTCCTCCCGA GGACTTTTTGGTGTCAGGGCCACATAAGCAACGCATATTACTCACAGCAATCATGTCATCAGTG GATAATCCTGCCAACTGCATCAATTTTTCACCCTTGTCACTTTCGAACTTGTCTGGGTTGATTG CTGCATAGATCATCAGCAAACGCAACTTGTTTTCACGACTTACACCCAATTGTGTCCTCAAAAA ATTGATTAATTCTTTAGTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCT CGAAGACCTTGCTCCCTTATTATGCTATTGAGTTTAC
Genomic sequence	CTTGAATACCCATCATCAGAGCCACGTGGCCGAGCCCATGTACCACCTGTCCGTCTGGATCTCA TAGAATGAGCTGGTTGGTGAGCTGGGCTAGTTCTGACTGAGCTGCTCATTGGCAGACCGTGGAA ACTTGGGCTAGGGTCGTTCATGCAATAGTATTCGTCTTTTGGTAATTCTCCCTTGCTAAGCTTC TCAATCAAGTCCTGTATAAAAGGTACAAGTTAACTATCGTATATTTTAGTCAAATGAAGGCAAA ACAAAATATATGCATTAGTACATCCTCGCTTTGGAGACTATGCCAATATCCAAGATGCCTATTA TTTGTGACTTAATGCATCTTGTTAGGGGCATCATTAAGTATCATCGACAGAGACCAGATGATTT CCCTAGTTGTCAAAGTTATATTTCAGAGACTATGGCAATATCCAGGGTAAATATATGGTGGAAA CCCCAACTTAGGTGAAAACCCATGTAAACCTCAACCAAAAGGTCATCTGAATTCAACAAAAAAG AACCACACATGTAGATGAGATGATACTACACAACCATGTAAAAAATCTTGTCCAAACGAAGTCA AGTTTGGACAAGATATTTTACATGGTTGTGTAGAATTCTCATCTACATGTGTGATTCTTTTGGT AGATTTAGATGACATTTTGGTCAATGTTTACACCCAGAAAGTTAATAATGAGATCATCATTTCA GGAAATGATACGGAACTACATAGTGATATTGATCCGGAAGAAGCTCAACAGGCACTTGAAATAG CCGAAGCTAACATGAGTAGAACTGAGGGTACGAAAGAATTGGTTGAAGCGAAGCTAGCTCCCAG ACGAACTAGGATACGAGTCAAGGCTGTTAATTGGATTCCCCCATCTAATTGAAGACAACCCAAC GGTTTAGTTGATACAAAGAAAAAGGGAAGAGGGTAGCGAAGCGAAGTAGGTCCAAAGCTATCTA GTAATTTTTCTACCTACCTACCTACCTACCTACTATTGGATTTGAATCAATGACTCAATTCAAG CAATACTTCAACCACTGAGTTAAGCACGCAAGAGTTTTCACCTAAGTAGAGTTTCCACCACATA TTTACCCCAATATCCAAGACTTCTTATTTGTGACTACAGGTATCTTGTCAGGCGCATCCTTTCT GAAAAGTACTAATCAGACATGATCATTCCTACAAGTAATATCAAAGCCATTCTCCTTATATGTA TGTCTAGCTTCCCTGGTGCAATCACTGCAATCCTGGTCGTGCCTTCAGGATGCACCACCAGGGT CACAGGGAACGACAGCCCATACAGAAATTCTATCCACACCAAAATTTATACGGAGAGGAAAATA TCGATGAAAACTATTCAAAAAAAATTGCAGATATCACTATAATATTGCTCTAATATATTTATAC CTCTAGAACAGGATAAAATCGGGAAAGTGCCCATGTAGATTCTTCCCCAGTTCGCTCCTTTCTA AGTCCATGCTTCTTCTGTTATCAGTAGGAATCAATTAATACATCATGAGATCAGGTTGGTAGCA GATAAATGTTCAGAAAGAACCAAAAAGAAAGCAATATTTCGTTTACCTTGTGAACATCAAATTT AAACGTAAAACCTCCTCCCGAGGACTTTTTGGTGTCAGGGCCACATAAGCAACGCATATTACTC ACAGCAATCATGTCATCAGTGGATAATCCTGCCAACTGTTAGCAAGCGAAATTTCTTACTGATT CCTGGCCAAGCATATACTCAAATCCAAATAATGTCCAAAATGGGCTCCTATCAACAATTCTGCA CAGTTGCTTTACGAATTACTCCCTCCATTCGAAATTGATCTACATATAATTTTTTTGAGGTTAT TCCTAAATGATCTACATATTTGTGTTCATTTATTAAGTCTATTCGTTATTTGTGCATTGGAGTA AATGGACATTGATGCATGAATCCATGCACACAAGTATTTATAACCCACATGCAATATCTTGATT TGCTATTGGCTAGGAAATAGTGGGGATGGTGCATGCATTGAGTTTGTTGCTAGAGTAAATATAG TATGAGAGAGTTATTAGCTTTTCTTGGTCTTGGTGTACCTATGAAATATGTAGATCAATTTGGA ATGGAGGGAGTAAAACACTATGTCATATTGTTCACCTGTGTTACACCAGATATTTAATGCCAGC ATAGAAGTCACGCTTATCCAATATGAAAAGAAACTGCATGTTTCATTCATGCACGTTTCATGTA TTCAATTATTATCGCATTGATGATAGAGAGTAAAGGGTAGACATACTTGGTGATATTTCATGAA AAGAAAATTTACAATAAAGCAAAAGGGAAACAGTGGAAGGTGAAAAACAACAACTTATCTAGCC AAAAAGTTGCACAGAAAAGTATACAGATTAAGCATAAAACATCTTGGGTTTGTTGAGTACGAAT AGAAAAACAGAAAATTTTACCTGCATCAATTTTTCACCCTTGTCACTTTCGAACTTGTCTGGGT TGATTGCTGCATAGATCATCAGCAAACGCAACTTGTTTTCACGACTTACACCCTGCATTAAGTA GAGTAAACAATGTCATTATTAAGTCAGTAATATCAAAACACAATGTTGAAGAACAACCAATGTC ATTCTAAAAAGTAATTCAAATATTAAATACCAATTGTGTCCTCAAAAAATTGATTAATTCTTTA GTTCCAGCATCACCAAATACAAGATCTTGCTCTAGCTGTCCAACATCTCGAAGACCTTGCTCCC TTATTATGCTATTGAGTTTAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_011654 osi_circ_003888* zma_circ_002045 zma_circ_008651* 
						
						PMCS
						0.131028817

Conservation Information
Conserved circRNAs	osi_circ_011654 osi_circ_003888* zma_circ_002045 zma_circ_008651*
PMCS	0.131028817

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							14944188-14946942(-)
14946687-14946942(-)
						
						Potential amino acid sequence
						
							MMGIQGKLNSIIREQGLRDVGQLEQDLVFGDAGTKELINFLRTQLGVSRENKLRLLMIYAAINP
DKFESDKGEKLMQLAGLSTDDMIAVSNMRCLCGPDTKKSSGGGFTFKFDVHKKKHGLRKERTGE
ESTWALSRFYPVLEDLIEKLSKGELPKDEYYCMNDPSPSFHGLPMSSSVRTSPAHQPAHSMRSR
RTGGTWARPRGSDDGYSR*(-)
MIYAAINPDKFESDKGEKLMQLAGLSTDDMIAVSNMRCLCGPDTKKSSGGGFTFKFDVHKKKHG
LRKERTGEESTWALSRFYPVLEDLIEKLSKGELPKDEYYCMNDPSPSFHGLPMSSSVRTSPAHQ
PAHSMRSRRTGGTWARPRGSDDGYSR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	14944188-14946942(-) 14946687-14946942(-)
Potential amino acid sequence	MMGIQGKLNSIIREQGLRDVGQLEQDLVFGDAGTKELINFLRTQLGVSRENKLRLLMIYAAINP DKFESDKGEKLMQLAGLSTDDMIAVSNMRCLCGPDTKKSSGGGFTFKFDVHKKKHGLRKERTGE ESTWALSRFYPVLEDLIEKLSKGELPKDEYYCMNDPSPSFHGLPMSSSVRTSPAHQPAHSMRSR RTGGTWARPRGSDDGYSR(-) MIYAAINPDKFESDKGEKLMQLAGLSTDDMIAVSNMRCLCGPDTKKSSGGGFTFKFDVHKKKHG LRKERTGEESTWALSRFYPVLEDLIEKLSKGELPKDEYYCMNDPSPSFHGLPMSSSVRTSPAHQ PAHSMRSRRTGGTWARPRGSDDGYSR(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os02g0452500_circ_g.2

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