Detail information of Os04g0421900_circ_g.3


General Information
CircRNA Name Os04g0421900_circ_g.3
ID in PlantcircBase osa_circ_023818
Alias NA
Organism Oryza sativa
Position chr4: 20869036-20870483  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0421900
Parent gene annotation Similar to H0525E10.11 protein. (Os04t0421900-01)
Parent gene strand +
Alternative splicing Os04g0421900_circ_g.2 Os04g0421900_circ_g.4 Os04g0421900_circ_g.5 Os04g0421900_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0421900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCCTAATTTTTGTTTTGTAGTCGAACTTGATCAGAAATGCTGCACGAAACTATCTGTTGGAT
TATGGGATTCACTGGGGAGCAGCACCAGCAGTAAAGgttatctggagaggtttggaggggaact
agctcagaacagatcaaataaagaaaacaaccatacccaaaatggatatgtaaatggtactaac
agtgaaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 398
Transcript exons: 20869036-20869261,20869426-20869519,20870406-20870483
GTTATCTGGAGAGGTTTGGAGGGGAACTAGCTCAGAACAGATCAAATAAAGAAAACAACCATAC
CCAAAATGGATATGTAAATGGTACTAACAGTGAAACATCTGCTGGCATGGATGGGGACTTGTAC
AAGAAGCTGTTGGTTGTTCTGAGTAACATTGGATATTGTAAAGCTGAACTTTCAGATGAACTGT
ATACCAAATACAGGCACATTTGGTCCCCAGTCAGGGATAATGATGAGCGTAGTGCTGACATGCG
AGATCTGATGACTTCTTTCTCAGCACTTGAGGAGAAAGTCCTGGAACAGTATACATTTGCAAAG
TCGAACTTGATCAGAAATGCTGCACGAAACTATCTGTTGGATTATGGGATTCACTGGGGAGCAG
CACCAGCAGTAAAG

Genomic sequence GTTATCTGGAGAGGTTTGGAGGGGAACTAGCTCAGAACAGATCAAATAAAGAAAACAACCATAC
CCAAAATGGATATGTAAATGGTACTAACAGTGAAACATCTGCTGGCATGGATGGGGACTTGTAC
AAGAAGCTGTTGGTTGTTCTGAGTAACATTGGATATTGTAAAGCTGAACTTTCAGATGAACTGT
ATACCAAATACAGGCACATTTGGTCCCCAGTCAGGTACCCGATCATCTTAGCTTATGTTCCACT
AACATTGTCTTACTGTCCTTTATAATTTTTGGTGCGAGTCGTTATCCCTGAATAGATTGATTGA
AAGCTTGTTATTTCATCTAAAAGCAATGCTTTGATACATTTGCTTCACTCAGTTAGTGTTCCTC
TCTCAGGGATAATGATGAGCGTAGTGCTGACATGCGAGATCTGATGACTTCTTTCTCAGCACTT
GAGGAGAAAGTCCTGGAACAGTATACATTTGCAAAGGTATGGTAGAAAATCCAGAATTGTTGAT
TAATCATTATTGGCCAAAAGATTTAGTTATAACCATGTTAGCTTTAATCCTTTCGTGTCTTGGT
GTGCAAAGTTACAAGTTTGAAACACCTGATTTAGCCCACTATTTGTTCTTCAGTAGTGGTATGC
CCAAAAAGGCCTTAATGGAAGTAATGATCACTTCTTTTTCTGAAGTTGTTCTATGGGAATATCT
GCGTAGACATGCACATGCCTCTATGCGTCTACTGGTTGATCTGATGTGAATCAAATGAAGCATT
TAACTTATTGCATGTTTATTCAAGATCCGTTGCAATATGTAGTCCTAAATAACTAATAGCTAGA
TCAAAATGTGCATAGTTCTATTTTCTGTGACTGAAGCATTTTATTATTGATACCCTAGTTAATG
TGCTAGTTTTGGATTTATTACTACCTCCATATTTTAATGTATGACGGCGTTGACTTTTTGACCA
ACGTTTGACCATTCATCTTATTCAAAAAATTTATGTAATTATCATTTATTTTATTATGACTTCA
TTCGTCATCAAATGTTCTTTAAGCATGACATAAATATTTTCATATTTGCACAAAATTTTTGAAT
AAAACGAATGGTCAAACGGTGGTTGAAAAGTCAACGGCATCATACATTAAAATACGGAGGGAGT
ACTAGTTATTACTCTGGAATATGTCAGATGTTTGTCCACTTCATAGATTATTATATTGTTTGAT
GACTAGGATAACTTTAATTCAAAATTGTTTGGAATGCCTACAGTGGAAGTTCATATATCATGCT
TGATAGTAGCATGATTTTTGGGGCTATAAATTCGGAGTCTATGCACATTTTGCTATCTTCCTTT
GCTTTGCCCTAATTTTTGTTTTGTAGTCGAACTTGATCAGAAATGCTGCACGAAACTATCTGTT
GGATTATGGGATTCACTGGGGAGCAGCACCAGCAGTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.233504852
Functional Information
Coding potential Y
Potential coding position 20869147-20869062(+)
Potential amino acid sequence MDGDLYKKLLVVLSNIGYCKAELSDELYTKYRHIWSPVRDNDERSADMRDLMTSFSALEEKVLE
QYTFAKSNLIRNAARNYLLDYGIHWGAAPAVKVIWRGLEGN*(+)
Sponge-miRNAs osa-miR2922
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017