Detail information of Os04g0421900_circ_g.5


General Information
CircRNA Name Os04g0421900_circ_g.5
ID in PlantcircBase osa_circ_023820
Alias NA
Organism Oryza sativa
Position chr4: 20869426-20870483  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0421900
Parent gene annotation Similar to H0525E10.11 protein. (Os04t0421900-01)
Parent gene strand +
Alternative splicing Os04g0421900_circ_g.2 Os04g0421900_circ_g.3 Os04g0421900_circ_g.4 Os04g0421900_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0421900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCCTAATTTTTGTTTTGTAGTCGAACTTGATCAGAAATGCTGCACGAAACTATCTGTTGGAT
TATGGGATTCACTGGGGAGCAGCACCAGCAGTAAAGggataatgatgagcgtagtgctgacatg
cgagatctgatgacttctttctcagcacttgaggagaaagtcctggaacagtatacatttgcaa
aggtatgg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 172
Transcript exons: 20869426-20869519,20870406-20870483
GGATAATGATGAGCGTAGTGCTGACATGCGAGATCTGATGACTTCTTTCTCAGCACTTGAGGAG
AAAGTCCTGGAACAGTATACATTTGCAAAGTCGAACTTGATCAGAAATGCTGCACGAAACTATC
TGTTGGATTATGGGATTCACTGGGGAGCAGCACCAGCAGTAAAG

Genomic sequence GGATAATGATGAGCGTAGTGCTGACATGCGAGATCTGATGACTTCTTTCTCAGCACTTGAGGAG
AAAGTCCTGGAACAGTATACATTTGCAAAGGTATGGTAGAAAATCCAGAATTGTTGATTAATCA
TTATTGGCCAAAAGATTTAGTTATAACCATGTTAGCTTTAATCCTTTCGTGTCTTGGTGTGCAA
AGTTACAAGTTTGAAACACCTGATTTAGCCCACTATTTGTTCTTCAGTAGTGGTATGCCCAAAA
AGGCCTTAATGGAAGTAATGATCACTTCTTTTTCTGAAGTTGTTCTATGGGAATATCTGCGTAG
ACATGCACATGCCTCTATGCGTCTACTGGTTGATCTGATGTGAATCAAATGAAGCATTTAACTT
ATTGCATGTTTATTCAAGATCCGTTGCAATATGTAGTCCTAAATAACTAATAGCTAGATCAAAA
TGTGCATAGTTCTATTTTCTGTGACTGAAGCATTTTATTATTGATACCCTAGTTAATGTGCTAG
TTTTGGATTTATTACTACCTCCATATTTTAATGTATGACGGCGTTGACTTTTTGACCAACGTTT
GACCATTCATCTTATTCAAAAAATTTATGTAATTATCATTTATTTTATTATGACTTCATTCGTC
ATCAAATGTTCTTTAAGCATGACATAAATATTTTCATATTTGCACAAAATTTTTGAATAAAACG
AATGGTCAAACGGTGGTTGAAAAGTCAACGGCATCATACATTAAAATACGGAGGGAGTACTAGT
TATTACTCTGGAATATGTCAGATGTTTGTCCACTTCATAGATTATTATATTGTTTGATGACTAG
GATAACTTTAATTCAAAATTGTTTGGAATGCCTACAGTGGAAGTTCATATATCATGCTTGATAG
TAGCATGATTTTTGGGGCTATAAATTCGGAGTCTATGCACATTTTGCTATCTTCCTTTGCTTTG
CCCTAATTTTTGTTTTGTAGTCGAACTTGATCAGAAATGCTGCACGAAACTATCTGTTGGATTA
TGGGATTCACTGGGGAGCAGCACCAGCAGTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.214543919
Functional Information
Coding potential Y
Potential coding position 20869452-20869428(+)
20869454-20869477(-)
20869513-20870458(-)
Potential amino acid sequence MRDLMTSFSALEEKVLEQYTFAKSNLIRNAARNYLLDYGIHWGAAPAVKG*(+)
MSALRSSLSLYCWCCSPVNPIIQQIVSCSISDQVRLCKCILFQDFLLKC*(-)
MYTVPGLSPQVLRKKSSDLACQHYAHHYPFTAGAAPQ*(-)
Sponge-miRNAs osa-miR2922
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017