Detail information of Os04g0421900_circ_g.4


General Information
CircRNA Name Os04g0421900_circ_g.4
ID in PlantcircBase osa_circ_023819
Alias NA
Organism Oryza sativa
Position chr4: 20869262-20869402  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0421900
Parent gene annotation Similar to H0525E10.11 protein. (Os04t0421900-01)
Parent gene strand +
Alternative splicing Os04g0421900_circ_g.2 Os04g0421900_circ_g.3 Os04g0421900_circ_g.5 Os04g0421900_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATCCCTGAATAGATTGATTGAAAGCTTGTTATTTCATCTAAAAGCAATGCTTTGATACATTT
GCTTCAgtacccgatcatcttagcttatgttccactaacattgtcttactgtcctttataattt
ttggtgcgagtcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 141
Transcript exons: 20869262-20869402
GTACCCGATCATCTTAGCTTATGTTCCACTAACATTGTCTTACTGTCCTTTATAATTTTTGGTG
CGAGTCGTTATCCCTGAATAGATTGATTGAAAGCTTGTTATTTCATCTAAAAGCAATGCTTTGA
TACATTTGCTTCA

Genomic sequence GTACCCGATCATCTTAGCTTATGTTCCACTAACATTGTCTTACTGTCCTTTATAATTTTTGGTG
CGAGTCGTTATCCCTGAATAGATTGATTGAAAGCTTGTTATTTCATCTAAAAGCAATGCTTTGA
TACATTTGCTTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.409141017
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017