Detail information of Os04g0421900_circ_g.6


General Information
CircRNA Name Os04g0421900_circ_g.6
ID in PlantcircBase osa_circ_023821
Alias NA
Organism Oryza sativa
Position chr4: 20869520-20869852  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0421900
Parent gene annotation Similar to H0525E10.11 protein. (Os04t0421900-01)
Parent gene strand +
Alternative splicing Os04g0421900_circ_g.2 Os04g0421900_circ_g.3 Os04g0421900_circ_g.4 Os04g0421900_circ_g.5
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGCCTCTATGCGTCTACTGGTTGATCTGATGTGAATCAAATGAAGCATTTAACTTATTGCAT
GTTTATTCAAGATCCGTTGCAATATGTAGTCCTAAAgtatggtagaaaatccagaattgttgat
taatcattattggccaaaagatttagttataaccatgttagctttaatcctttcgtgtcttggt
gtgcaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATGGTAGAAAATCCAGAATTGTTGATTAATCATTATTGGCCAAAAGATTTAGTTATAACCAT
GTTAGCTTTAATCCTTTCGTGTCTTGGTGTGCAAAGTTACAAGTTTGAAACACCTGATTTAGCC
CACTATTTGTTCTTCAGTAGTGGTATGCCCAAAAAGGCCTTAATGGAAGTAATGATCACTTCTT
TTTCTGAAGTTGTTCTATGGGAATATCTGCGTAGACATGCACATGCCTCTATGCGTCTACTGGT
TGATCTGATGTGAATCAAATGAAGCATTTAACTTATTGCATGTTTATTCAAGATCCGTTGCAAT
ATGTAGTCCTAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.11986987
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017