Detail information of Os02g0220500_circ_ag.4


General Information
CircRNA Name Os02g0220500_circ_ag.4
ID in PlantcircBase osa_circ_013896
Alias Os02circ08547/Os_ciR39
Organism Oryza sativa
Position chr2: 6718702-6723684  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI, SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os02g0220500_circ_ag.1 Os02g0220500_circ_ag.2 Os02g0220500_circ_ag.3 Os02g0220500_circ_ag.5 Os02g0220500_circ_ag.6 Os02g0220500_circ_ag.7
Support reads 2/2013/246
Tissues panicle/root/shoot, anther, seed, pistil
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTCTATTGCTTGATTTAGTTCTAAGTTCCTCTCATTTTCCTGAAGTTACTCGCTCGAAGTCT
GACAACCCACTCTATGGGTCTTCACTGATTGAATATgcccacatcgagcagtggaatgactttt
cggccacagaggttgatgctaatattggaaaatggctctacccacggctaggaattgctcccta
tgttgctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCCACATCGAGCAGTGGAATGACTTTTCGGCCACAGAGGTTGATGCTAATATTGGAAAATGGC
TCTACCCACGGCTAGGAATTGCTCCCTATGTTGCTGTGGTAAGTATGGTCAAGTGGGTGTCATA
GTGTTTTCCTTGTGTCAGCAATTTGTTGTCTAATCTTATTTCTGCCCAACAGAGTGAGGAAGCA
GCTATTGCTGCTTTGAAGAGATCATTGGGTGCCCTCAACACACACCTTGCATCAAACACATACC
TTGTTGGCCATTCGGTGACTCTTGCTGATATTGTGATGACCTGTAACCTCTACATGGGCTTTGC
TCGGATCATGACCAAGAGTTTTACTTCTGAGTTCCCTCATGTTGAGAGGTACTTCTGGACCATG
GTTAATCAGCCAAACTTTAAGAAAGTCTTGGGTGATGTGAAGCAGGCAGAGTCTGTCCCACCAG
TTCAAAAGAAGGCTCCACCACCAAAGGAGCAGAAGCCAAAGGAAGCCAAGAAAGAGGCTCCAAA
ACCTAAGGCAGTTGAGAAACCAGAGGAGGAAGAGGAGGCACCAAAGCCAAAGCCAAAGAACCCT
CTTGATTTGCTCCCTCCAAGCAAGATGATCCTTGATGAGTGGAAGAGGTTATACTCAAACACAA
AAACAAATTTCCGTGAGGTTGCTATCAAGGGTAAGTTTCTTTTGGGAATCTAGTAGTCACTAAA
AGGTTTCCACGTAGAAAAGTATAGTTTCTTTCGGGAATCTAGTAGTCACTAAAAAGGTTTCCAC
AGAGAAAAGTTTACTACATTGCTGTGAGTACACTAGAAAGATATGAGTACAAATTGGCTTACAA
ATTATAACAGCTACTAAAGAGTCAATGCAAATTTGTTTGTTGACCTGTCAACTGTTAGCAAGTT
ATATCTCTTTGATTACCATTATTTGTCATCTGCTCCCAACTTCTGTTGTGTATGAAGTTCTGTG
AATTGAACTCAACATGTCTTCTCACTTATTGCAGGTTTCTGGGATATGTATGACCCAGAAGGTT
ACTCCCTGTGGTTTTGTGACTACAAATACAATGACGAGAACACTGTGTCCTTCGTGACCATGAA
CAAGGTTGGTGGGTTCCTGCAGCGAATGGACCTGTGCCGCAAATATGCTTTCGGGAAGATGCTT
GTGATCGGCTCTGAGCCGCCATTCAAGGTGAAGGGTCTTTGGCTCTTCCGTGGCCCCGAGATCC
CCAAGTTCGTCATGGATGAAGTCTATGACATGGAGCTCTATGAGTGGACCAAGGTTGACATCTC
AGATGAGGCCCAGAAGGAGCGCGTCAGCGCCATGATTGAGGACCTGGAGCCATTTGAGGGCGAG
TCGTTGCTGGATGCGAAATGCTTCAAGTGAGGCGTCGTTGGAGCAAGGATACCGTGGAAAATGA
GCTATTTAGGTTTTGGATTTACCCTTCTACAATAGTTCATGATTATGAAAAAAAAAATACTATC
ACCATGTGGCTATATTAGTCAATATTGAGTGTGCTGGTCTTTTCTTTTTGTACTGTTTGCTAGA
GTTTTGGCCCTTTTTAACCTTGTAGTTAAGTTGTTAAGACACTTATCCATCGAATCATCGTCAG
AAACACACCATTCGAATCTGCTGTTGCTCATGTGTTAAACTTGCCATTCTGATAATGTTTTGGA
AATAGGCAACAAAACGAGTTATGGTGCTGGGTTATTTTATGTATTTTATTCTGTTGTTCATGTT
TGTTGTGTTTCTTTTTTTTTTCTTTTGCTTTCAGCGCTGGGCACGCAGACGAAGGCCATGTTCG
TTTCTATTGAGATTTTCTTGATTATCTGGTTTGGTGATGGCTATTTGAGGGTATATAAATGAAT
GAATGAACGAATTACTATTAATTTAAAATTTTGCTTTAGAAAAATATTTCCAAGAAACTTCTAT
TATATAGAAATTTTTTACATGAAAAGCATAGCTTGGTAAGCCGGATAATAATCTCCTGAATCAA
AAATGGGATCTACAACGCATGGATCAGAGATTTGCGTTTTGTCAATGTGTCAACTTGCCTAAGC
ATTTGCGGAGTAAATTTAGTGACGTTAAAGAAAGAAAGGGAAGGAAGGAGAAACAACTACGGAT
GACAACGGTTTAGGGTTTAGAGTTAATGTGGAAGAAATAGAGGGAATGAAGGAGAAATATCGTT
GCTATGCATGACAACGGCTCCTCAGAGTCAAGTGAAAGAAAGAGAGGGACGCATGACATGACAA
CGGCTCCTCAGAGTCACGTGAAAGAAAGAGATGGAAGGAAGGAAAAACATCGTTGATACGCATG
ACAACGGCTCAGAGTCGACTCTTAGCATTCATTAACGAAAAGTTTGTTGCATGAGAGTGGAGAA
AAATGAAAGAAGTATAATAAAAATTTATTTATACATTAATGGTTTAGAAAACTTATTGTCTTTA
TTACTTTAGTACTTCCTCCGTTTACTTTCTAACATTGCTAATATTCATATATATGTTAATGAAT
CTAAACATATATGTGTGCCTAGATTCACTAACATCTATATGAATGTGAAGAATGCTAGAAAGTC
TTATAACCTGAAACGGAGGTAGTAGGATATAGTCTCTAGTAATATTAATTAATATAAAGAGCTC
ATATTAGACTCTACCTTTATACATGCCTTGAAATTAACTCACAGCATCACCACCATGCGAACAT
TAAATCCTCCTTACTCCATTTCGTATTCTATAATACTATCTCCTTCCCCTTAATAACGTTGGTC
CTTACTCCACTCAGTATTCTGTAATACTAATCTCCTTCCCCTTAATAACTTTGGTTAGTTTAAT
TTTGAGTAAATTTTAGGGTGTTTGGTTGTAGTCACAGTTGTGGCAAGATTCTCTTCCAATAAAC
GAGTCATATACGTTATTGACTCAAAAATGTGTTGCAAGATTTTCTTAGGCTTGCTAAAGTGTGA
CCAAGAATTTGATCGCCTCACTTAGACAAGTGTGGCAATACTTTTGTATGTAGTTTTATGATAA
ATTAACCTATATATATATAATTTTCTAAAATTTATTTAATTTTTTTATGGGAAAGAAATGGATT
TAATTTTTTTTAGAAAAAATGCCCAAGGCCCGTTTCGATCCAACGGGCTCGACTGGAAGGGGCC
AGAGTGCCAGACGAATGCCCGCCTACGGAGTGGTTGGATCTGCTCTGCGCCGTCCGATCTGTCG
CAAGGCTTACTCATCGGACGGCCGAGATCACCCGCGCGCAACCCTAGGCGAGATCGTAAGTAGA
ATCGGCTGCGTCGAATCCCTCCACTGTTTTTGCTGCCGCTGCTACTTCTTCCACTAGGGTTCGT
CTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCGTAAGATCTCCCCGATTCGCTACAA
CTAACTAGTGTGCTTGCGCCATTGTTGCGTACTGTTGATTTTGCGGATTTTTTTTTAAATTTTT
TTGGATTTTTGTTTCCTCATGATGTGCAGATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGG
CCCCGTCGAGATGGCGCTCGTAAGTGATTCTTGATCTAACCTCGTTTGCTCGTGTTCTTTAGTT
GATTTAGTGGAGAAGCTTGGCATGATGCGGTGGGGTGTAGTTTTTTTTTTTTCATTTTCAAATT
GTAGCATCTGTGGATTGCTGTATGAGTCTTCTGTAAAGCATATCGTTTTTTTCTGCACGATCAG
GGTTGATTTGGTGCGCATTTCTACCCAGCATTTAGGGAGGGTTTTGGTAGGGTGGTGACAGTTT
AGGTGTCACGGATTTTATTTAGATCGGTGGACAATGTTCGGTCTATGTCTAGCATCTCTTATTT
ACTTAATGTTGTCTTGCAAGCTCGTTGAAATGCAGATTTCTGGTTTTTTTTTTTACTTTGTTAC
TTTCTGGTTCAAATGCTGGCGGATCAAGTGAATATTAAATAATTTGTGCAGTGAGGAAGCAAGG
ACCTGCCTTCGAAATTTTTCTAGTCTATATTTCTGATTATTTGATCCCAAGTGTTAAAGATTGT
TGCCAAGGTTTTCCAATAGTTAGCCTTTCTTATATACATTTGATGATGTAAGACCAAATTCAAA
TGCATACAAATGAAAGCCTGATCACATGACAGTTTGTTGACAATATATACATTATCCTGTAGAG
ATTCGCACAGGGCTCTGCTTTCCTAGAATGCTTACAGCTTCCTGTTTGATGCAAATGGGATTAT
TTGGAGTTTCGGAAATGAAGTCTTATTCGCTTTCTGAATAGCCGATGAGCATGTAGACATGTCT
CATGCAGACATTATAGCTCAGCACTTGTGCACATAATTATATAATATGTATGTATTGACCATCA
CTCTGTAGAACATTGAATGGCTAAAGTCACTGTGTAATATGTGCTGCTTGATCTATGAATTTGT
CCCGTTGTTTGTATATTTTTTGTTTATCATGTTTGTGTATCCATCCTTATGGACATGCTAGTCA
AACTGTCCTTGTAGTGTTGTCATGTCATGCACTTCCCTAACCTATTTTCACGCTCAACTTTGTA
ACTTGCATTGGTGTAGGTATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATT
GCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGGGTGTCTCCAACA
AGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGGTTTGAGCAAAACCACCTCTGAATTT
TGGTACATTTGCACAGAATCTGATTTGGACACGTTTCCTTTCAGGTCCCTATTCTAGAGACTCC
TGATGGTCCTGTTTTTGAAAGCAATGCGATTGCACGATATGGTAAGTGATACATAGCAAGGATT
CCGTTCTTTTAATCCTTTTCTCTCTATTGCTTGATTTAGTTCTAAGTTCCTCTCATTTTCCTGA
AGTTACTCGCTCGAAGTCTGACAACCCACTCTATGGGTCTTCACTGATTGAATAT
Conservation Information
Conserved circRNAs osi_circ_012722
PMCS 0.677207218
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA