Detail information of BGIOSGA007804_circ_ag.3


General Information
CircRNA Name BGIOSGA007804_circ_ag.3
ID in PlantcircBase osi_circ_012722
Alias Chr02:6797109_6802136(MH63RS2), Chr02:6797109_6802136(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 7669964-7674960  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA007804_circ_igg.1 BGIOSGA007804_circ_ag.1 BGIOSGA007804_circ_ag.2 BGIOSGA007804_circ_ag.4 BGIOSGA007804_circ_ag.5 BGIOSGA007804_circ_g.1 BGIOSGA007804_circ_ag.2 BGIOSGA007805_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTCTATTGCTTGATTTAGTTCTAAGTTCCTCTCATTTTCCTGAAGTTACTCGCTCGAAGTCT
GACAACCCACTCTATGGGTCTTCACTGATTGAATATggcccacatcgagcagtggaatgacttt
tcggccacagaggttgatgctaatattggaaaatggctctacccacggctaggaattgctccct
atgttgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCCCACATCGAGCAGTGGAATGACTTTTCGGCCACAGAGGTTGATGCTAATATTGGAAAATGG
CTCTACCCACGGCTAGGAATTGCTCCCTATGTTGCTGTGGTAAGTATGGTCAAGTGGGTGTCAT
AGTGTTTTCCTTGTGTCAGCAATTTGTTGTCTAATCTTATTTCTGCCCAACAGAGTGAGGAAGC
AGCTATTGCTGCTTTGAAGAGATCATTGGGTGCCCTCAACACACACCTTGCATCAAACACATAC
CTTGTTGGCCATTCGGTGACTCTTGCTGATATTGTGATGACCTGTAACCTCTACATGGGCTTTG
CTCGGATCATGACCAAGAGTTTTACTTCTGAGTTCCCTCATGTTGAGAGGTACTTCTGGACCAT
GGTTAATCAGCCAAACTTTAAGAAAGTCTTGGGTGATGTGAAGCAGGCAGAGTCTGTCCCACCA
GTTCAAAAGAAGGCTCCACCACCAAAGGAGCAGAAGCCAAAGGAAGCCAAGAAAGAGGCTCCAA
AACCTAAGGCAGTTGAGAAACCAGAGGAGGAAGAGGAGGCACCAAAGCCAAAGCCAAAGAACCC
TCTTGATTTGCTCCCTCCAAGCAAGATGATCCTTGATGAGTGGAAGAGGTTATACTCAAACACA
AAAACAAATTTCCGTGAGGTTGCTATCAAGGGTAAGTTTCTTTTGGGAATCTAGTAGTCACTAA
AAGGTTTCCACGTAGAAAAGTATAGTTTCTTTTGGGAATCTAGTAGTCACTAAAAAGGTTTCCA
CAGAAAAGTTTACTACATTGCTGTGAGTACACTAGAAAGATATGAGTACAAATTGGCTTACAAA
TTATAACAGCTACTAAAGAGTCAATGCAAATTTGTTTGTTGACCTGTCAACTGTTAGCAAGTTA
TATCTCTTTGATTACCATTATTTGTCATCTGCTCCCAACTTCTGTTGTGTATGAAGTTCTGTGA
ATTGAACTCAACATGTCTTCTCACTTATTGCAGGTTTCTGGGATATGTATGACCCAGAAGGTTA
CTCCCTGTGGTTTTGTGACTACAAATACAATGACGAGAATACTGTGTCCTTCGTGACCATGAAC
AAGGTTGGTGGGTTCCTGCAGCGAATGGACCTGTGCCGCAAATATGCTTTCGGGAAGATGCTTG
TGATCGGCTCTGAGCCGCCATTCAAGGTGAAGGGTCTTTGGCTCTTCCGTGGCCCCGAGATCCC
CAAGTTCGTCATGGATGAAGTCTATGACATGGAGCTCTATGAGTGGACCAAGGTTGACATCTCA
GATGAGGCCCAGAAGGAGCGCGTCAGCGCCATGATTGAGGACCTGGAGCCATTTGAGGGCGAGT
CGTTGCTGGATGCGAAATGCTTCAAGTGAGGCGTCGTTGGAGCAAGGATACCGTGGAAAATGAG
CTATTTAGGTTTTGGATTTACCCTTCTACAATAGTTCATGATTATAAAAAAAAAATACTATCAC
CATGTGGCTATATTAGTCAATATTGAGTGTGCTGGTCTTTTCTTTTTGTACTGTTTGCTAGAGT
TTTGGCCCTTTTTAACCTTGTAGTTAAGTTGTTAAGACACTTATCCATCGAATCATCGTCAGAA
ACACACCATTCGAATCTGCTGTTGCTCATGTGTTAAACTTGCCATTCTGATAATGTTTTGGAAA
TAGGCAACAAAACGAGTTATGGTGCTGGGTTATTTTATGTATTTTATTCTGTTGTTCATGTTTG
TTGTGTTTCTTTTTTTTTTCTTTTGCTTTCAGCGCTGGGCACGCAGACGAAGGCCATGTTCGTT
TCTATTGAGATTTTCTTGATTATCTGGTTTGGTGATGGCTATTTGAGGGTATATAAATGAATGA
ATGAACGAATTACTATTAATTTAAAATTTTGCTTTAGAAAAATATTTCCAAGAAACTTCTATTA
TATAGAAATTTTTTACATGAAACGCATAGCTTGGTAAGCCGGATAATAATCTCCTGAATCAAAA
ATGGGATCTACAACGCATGGATCAGAGATTTGCGTTTTGTCAATGTGTCAACTTGCCTAAGCAT
TTGCGGAGTAAATTTAGTGACGTTAAAGAAAGAAAGGGAAGGAAGGAGAAACAGATAATAAGAG
GGACGGATGACAACAGTTCAGAGTTAACGTGGAAGAAATAGAGGGAATGAAGAAGAAACATCGT
TGCTATGCATGACAACGGCTCCTCAGAGTCAAGTGAAAGAAAGAGAGGGACGCATGACATGACA
ACGGCTCCTCAGAGTCACGTGAAAGAAAGAGATGGAAGGAAGGAGAAACATCGTTGATACGCAT
GACAACGGCTCAGAGTCGACTCTTAGCATTCATTAACGAAAAATTTGTTGCATGAGAGTGGAGA
AAAATGAAAGAAGTATAATAAAAATTTATTTATGTATTAATGGTTTAGAAAACTTATTGTCTTT
ATTACTGTAGTACTTCCTCCGTTTACTTTCTAACATTGCTCATATTCATATATATATGTTAATG
AATCTAGACATATATGTGTGCCTAGATTCACTAACATCTATATGAATGTGGAGAATGCTAGAAA
GTCTTATAACCTGAAACGGAGGTAGTAGGATATAGTCTCTAGTAATATTAATTAATATAAAGAG
CTCATATTAGACTCTACCTTTATACATGCCTTAAAATTAACTCACAGCATCACCACCATGCGAA
CATTAAATCCTCCTTACTCCATTCCGTATTCTGTAATACTATCTCCTTCCCCTTAATAACGTTG
GTCCTTACTCTACTCAGTATTCTGTAATACTAATCTCCTTCCCCTTAATAACTTTGGTTAGTTT
AATTTTGAGTAAATTATAGGGTGTTTGGTTGTAGTCACAGTTGTGGCAAGATTCTCTTCCAATA
AACGAGTCATATACGTTATTGACTCAAAAAGGTGTTGCAAGATTTTCTTAGGCTTGCTAAAGTG
TGACCAAGAATTTGATCGCCTCAACTTAGACAAGTGTGGCAATACTTTTGTATGTAGTTTTATG
ATAAATTAACCTATATATATATAATTTTCTAAAATTTATTTAATTTTTTTATGGCAAAGAAATG
GATTTAATTTTTTTTTTAGAAAAAATGCCCAAGGCCCGTTTCGATCCAACGGGCTCGACTGGAA
GGGGCCAGAGTGCCAGACGAATGCCCGCCTACGGAGTGGTTGGATCTGCTCTGCGCCGTCCGAT
CTGTCGCAAGGCTTACTCATCGGACGGCCGAGATCACCCGCGCGCAACCCTAGGCGAGATCGTA
AGTAGAATCGGCTGCGTCGAATCCCTCCACTGTTTTTGCTGCCGCTGCTACTTCTTCCACTAGG
GTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCGTAAGATCTCCCCGATTCG
CTACAACTAACTAGTGTGCTTGCGCCATTGTTGCGTACTGTTGATTTTGCGGAATTTTTTTTAA
ATTTTTTTGGATTTTTGTTTCCTCATGATGTGCAGATCTGAAATCGAGTGAGTGGGAGCTAAGG
CGGCGGCCCCGTCGAGATGGCGCTCGTAAGTGATTCTTGATCTAACCTCGTTTGCTCGTGTTCT
TTAGTTGATTTAGTGGAGAAGCTTGGCATGATGCGGTGGGGTGTAGTTTTTTTTTTTTTTTTTT
CATTTTCAAATTGTAGCATCTGTGGATTGCTGTATGAGTCTTCTGTAAAGCATATCGTTTTTTT
CTGCACGATCAGGGTTGATTTGGTGCGCATTTCTACCCAGCATTTAGGGAGGGTTTTGGTAGGG
TGGTGACAGTTTAGGTGTCACGGATTTTATTTAGATCGGTGGACAATGTTCGGTCTATGTCTAG
CATCTCTTATTTTCTTAATGTTGTCTTGCAAGCTCGTTGAAATGCAGATTTCTGGTTTTTTTTT
TTTTACTTTGTTACTTTCTGGTTCAAATGCTGGCGGATCAAGTGAATATTAAATAATTTGTGCA
GTGAGGAAGCAAGGACCTGCCTTCGAAATTTTTCTAGTCTATATTTCTGATTATTTGATCCCAA
GTGTTAAAGATTGTTGCCAAGGTTTTCCAATAGTTAGCCTTTCTTATATAATTTTGATGATGTA
AGACCAAATTCAAATGCATACAAATGAAAGCCTGATCACATGACAGTTTGTTGACAATATATAC
ATTATCCTGTAGAGATTTGCACAGGGCTCTGCTTTCCTAGAACGCTTACAGCTTCCTGTTTGAT
GCAAATGGGATTATTTGGAGTTTCGGAAATGAAGGCTTATTCGCTTTCTGAATAGCCGATGAGC
ATGTAGACATGTCTCATGCAGACATTATAGCTCAGCACTTGTGCACATAATTATATAATATGTA
TGTATTGACCATCACTCTGTAGAACATTGAATGGCTAAAGTCACTGTGTAATATGTGCTGCTTG
ATCTATGAATTTGTCCCGTTGTTTGTATATTTTTTGTTTATCATGTTTGTGTATCCATCCTTAT
GGACATGCTAGTCAAACTGTCCTTGTAGTGTTGTCATGTCATGCACTTCCCTAACCTATTTTCA
CGCTCAACTTTGTAACTTGCATTGGTGTAGGTATTGCATACTTTCGATGGAAACAAGAATGCAT
TCAAGGCACTCATTGCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGAT
GGGTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGGTTTGAGCAAAA
CCACCTCTGAATTTTGGTACATTTGCACAGAATCTGATTTGGACACGTTTCCTTTCAGGTCCCT
ATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATTGCACGATATGGTAAGTGAT
ACATAGCAAGGATTCCGTTCTTTTAATCCTTTTCTCTCTATTGCTTGATTTAGTTCTAAGTTCC
TCTCATTTTCCTGAAGTTACTCGCTCGAAGTCTGACAACCCACTCTATGGGTCTTCACTGATTG
AATAT
Conservation Information
Conserved circRNAs osa_circ_013896
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021