Detail information of Os02g0220500_circ_ag.2


General Information
CircRNA Name Os02g0220500_circ_ag.2
ID in PlantcircBase osa_circ_013894
Alias Os_ciR44
Organism Oryza sativa
Position chr2: 6718423-6723411  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os02g0220500_circ_ag.1 Os02g0220500_circ_ag.3 Os02g0220500_circ_ag.4 Os02g0220500_circ_ag.5 Os02g0220500_circ_ag.6 Os02g0220500_circ_ag.7
Support reads 1658/111
Tissues root/seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGGGTGTCTCCAACAAG
ACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGattcctgttctagagactcctgatggtc
ctgtttttgagagcaatgcgattgcacgatatggtaagtgatacatagcaaggaattggagttc
tcttaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCCTGTTCTAGAGACTCCTGATGGTCCTGTTTTTGAGAGCAATGCGATTGCACGATATGGTA
AGTGATACATAGCAAGGAATTGGAGTTCTCTTAATCTTTTTCTATCATATCTGATTTAGTTCTA
AGTCACTGTCATTTTCCTGAAGTTACCCGCTCGAAGGCTGACAACCCACTCTATGGGTCTTCAC
TGATTGAATATGTGAGTGGTCTTCCATAGATATTTAAGATCATTCTTGATTATTTTACGAGCTT
CTAGAATTGTATGTTTCTTCCAGGCCCACATCGAGCAGTGGAATGACTTTTCGGCCACAGAGGT
TGATGCTAATATTGGAAAATGGCTCTACCCACGGCTAGGAATTGCTCCCTATGTTGCTGTGGTA
AGTATGGTCAAGTGGGTGTCATAGTGTTTTCCTTGTGTCAGCAATTTGTTGTCTAATCTTATTT
CTGCCCAACAGAGTGAGGAAGCAGCTATTGCTGCTTTGAAGAGATCATTGGGTGCCCTCAACAC
ACACCTTGCATCAAACACATACCTTGTTGGCCATTCGGTGACTCTTGCTGATATTGTGATGACC
TGTAACCTCTACATGGGCTTTGCTCGGATCATGACCAAGAGTTTTACTTCTGAGTTCCCTCATG
TTGAGAGGTACTTCTGGACCATGGTTAATCAGCCAAACTTTAAGAAAGTCTTGGGTGATGTGAA
GCAGGCAGAGTCTGTCCCACCAGTTCAAAAGAAGGCTCCACCACCAAAGGAGCAGAAGCCAAAG
GAAGCCAAGAAAGAGGCTCCAAAACCTAAGGCAGTTGAGAAACCAGAGGAGGAAGAGGAGGCAC
CAAAGCCAAAGCCAAAGAACCCTCTTGATTTGCTCCCTCCAAGCAAGATGATCCTTGATGAGTG
GAAGAGGTTATACTCAAACACAAAAACAAATTTCCGTGAGGTTGCTATCAAGGGTAAGTTTCTT
TTGGGAATCTAGTAGTCACTAAAAGGTTTCCACGTAGAAAAGTATAGTTTCTTTCGGGAATCTA
GTAGTCACTAAAAAGGTTTCCACAGAGAAAAGTTTACTACATTGCTGTGAGTACACTAGAAAGA
TATGAGTACAAATTGGCTTACAAATTATAACAGCTACTAAAGAGTCAATGCAAATTTGTTTGTT
GACCTGTCAACTGTTAGCAAGTTATATCTCTTTGATTACCATTATTTGTCATCTGCTCCCAACT
TCTGTTGTGTATGAAGTTCTGTGAATTGAACTCAACATGTCTTCTCACTTATTGCAGGTTTCTG
GGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTTTGTGACTACAAATACAATGACGAGAAC
ACTGTGTCCTTCGTGACCATGAACAAGGTTGGTGGGTTCCTGCAGCGAATGGACCTGTGCCGCA
AATATGCTTTCGGGAAGATGCTTGTGATCGGCTCTGAGCCGCCATTCAAGGTGAAGGGTCTTTG
GCTCTTCCGTGGCCCCGAGATCCCCAAGTTCGTCATGGATGAAGTCTATGACATGGAGCTCTAT
GAGTGGACCAAGGTTGACATCTCAGATGAGGCCCAGAAGGAGCGCGTCAGCGCCATGATTGAGG
ACCTGGAGCCATTTGAGGGCGAGTCGTTGCTGGATGCGAAATGCTTCAAGTGAGGCGTCGTTGG
AGCAAGGATACCGTGGAAAATGAGCTATTTAGGTTTTGGATTTACCCTTCTACAATAGTTCATG
ATTATGAAAAAAAAAATACTATCACCATGTGGCTATATTAGTCAATATTGAGTGTGCTGGTCTT
TTCTTTTTGTACTGTTTGCTAGAGTTTTGGCCCTTTTTAACCTTGTAGTTAAGTTGTTAAGACA
CTTATCCATCGAATCATCGTCAGAAACACACCATTCGAATCTGCTGTTGCTCATGTGTTAAACT
TGCCATTCTGATAATGTTTTGGAAATAGGCAACAAAACGAGTTATGGTGCTGGGTTATTTTATG
TATTTTATTCTGTTGTTCATGTTTGTTGTGTTTCTTTTTTTTTTCTTTTGCTTTCAGCGCTGGG
CACGCAGACGAAGGCCATGTTCGTTTCTATTGAGATTTTCTTGATTATCTGGTTTGGTGATGGC
TATTTGAGGGTATATAAATGAATGAATGAACGAATTACTATTAATTTAAAATTTTGCTTTAGAA
AAATATTTCCAAGAAACTTCTATTATATAGAAATTTTTTACATGAAAAGCATAGCTTGGTAAGC
CGGATAATAATCTCCTGAATCAAAAATGGGATCTACAACGCATGGATCAGAGATTTGCGTTTTG
TCAATGTGTCAACTTGCCTAAGCATTTGCGGAGTAAATTTAGTGACGTTAAAGAAAGAAAGGGA
AGGAAGGAGAAACAACTACGGATGACAACGGTTTAGGGTTTAGAGTTAATGTGGAAGAAATAGA
GGGAATGAAGGAGAAATATCGTTGCTATGCATGACAACGGCTCCTCAGAGTCAAGTGAAAGAAA
GAGAGGGACGCATGACATGACAACGGCTCCTCAGAGTCACGTGAAAGAAAGAGATGGAAGGAAG
GAAAAACATCGTTGATACGCATGACAACGGCTCAGAGTCGACTCTTAGCATTCATTAACGAAAA
GTTTGTTGCATGAGAGTGGAGAAAAATGAAAGAAGTATAATAAAAATTTATTTATACATTAATG
GTTTAGAAAACTTATTGTCTTTATTACTTTAGTACTTCCTCCGTTTACTTTCTAACATTGCTAA
TATTCATATATATGTTAATGAATCTAAACATATATGTGTGCCTAGATTCACTAACATCTATATG
AATGTGAAGAATGCTAGAAAGTCTTATAACCTGAAACGGAGGTAGTAGGATATAGTCTCTAGTA
ATATTAATTAATATAAAGAGCTCATATTAGACTCTACCTTTATACATGCCTTGAAATTAACTCA
CAGCATCACCACCATGCGAACATTAAATCCTCCTTACTCCATTTCGTATTCTATAATACTATCT
CCTTCCCCTTAATAACGTTGGTCCTTACTCCACTCAGTATTCTGTAATACTAATCTCCTTCCCC
TTAATAACTTTGGTTAGTTTAATTTTGAGTAAATTTTAGGGTGTTTGGTTGTAGTCACAGTTGT
GGCAAGATTCTCTTCCAATAAACGAGTCATATACGTTATTGACTCAAAAATGTGTTGCAAGATT
TTCTTAGGCTTGCTAAAGTGTGACCAAGAATTTGATCGCCTCACTTAGACAAGTGTGGCAATAC
TTTTGTATGTAGTTTTATGATAAATTAACCTATATATATATAATTTTCTAAAATTTATTTAATT
TTTTTATGGGAAAGAAATGGATTTAATTTTTTTTAGAAAAAATGCCCAAGGCCCGTTTCGATCC
AACGGGCTCGACTGGAAGGGGCCAGAGTGCCAGACGAATGCCCGCCTACGGAGTGGTTGGATCT
GCTCTGCGCCGTCCGATCTGTCGCAAGGCTTACTCATCGGACGGCCGAGATCACCCGCGCGCAA
CCCTAGGCGAGATCGTAAGTAGAATCGGCTGCGTCGAATCCCTCCACTGTTTTTGCTGCCGCTG
CTACTTCTTCCACTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCGT
AAGATCTCCCCGATTCGCTACAACTAACTAGTGTGCTTGCGCCATTGTTGCGTACTGTTGATTT
TGCGGATTTTTTTTTAAATTTTTTTGGATTTTTGTTTCCTCATGATGTGCAGATCTGAAATCGA
GTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCGTAAGTGATTCTTGATCTAACC
TCGTTTGCTCGTGTTCTTTAGTTGATTTAGTGGAGAAGCTTGGCATGATGCGGTGGGGTGTAGT
TTTTTTTTTTTCATTTTCAAATTGTAGCATCTGTGGATTGCTGTATGAGTCTTCTGTAAAGCAT
ATCGTTTTTTTCTGCACGATCAGGGTTGATTTGGTGCGCATTTCTACCCAGCATTTAGGGAGGG
TTTTGGTAGGGTGGTGACAGTTTAGGTGTCACGGATTTTATTTAGATCGGTGGACAATGTTCGG
TCTATGTCTAGCATCTCTTATTTACTTAATGTTGTCTTGCAAGCTCGTTGAAATGCAGATTTCT
GGTTTTTTTTTTTACTTTGTTACTTTCTGGTTCAAATGCTGGCGGATCAAGTGAATATTAAATA
ATTTGTGCAGTGAGGAAGCAAGGACCTGCCTTCGAAATTTTTCTAGTCTATATTTCTGATTATT
TGATCCCAAGTGTTAAAGATTGTTGCCAAGGTTTTCCAATAGTTAGCCTTTCTTATATACATTT
GATGATGTAAGACCAAATTCAAATGCATACAAATGAAAGCCTGATCACATGACAGTTTGTTGAC
AATATATACATTATCCTGTAGAGATTCGCACAGGGCTCTGCTTTCCTAGAATGCTTACAGCTTC
CTGTTTGATGCAAATGGGATTATTTGGAGTTTCGGAAATGAAGTCTTATTCGCTTTCTGAATAG
CCGATGAGCATGTAGACATGTCTCATGCAGACATTATAGCTCAGCACTTGTGCACATAATTATA
TAATATGTATGTATTGACCATCACTCTGTAGAACATTGAATGGCTAAAGTCACTGTGTAATATG
TGCTGCTTGATCTATGAATTTGTCCCGTTGTTTGTATATTTTTTGTTTATCATGTTTGTGTATC
CATCCTTATGGACATGCTAGTCAAACTGTCCTTGTAGTGTTGTCATGTCATGCACTTCCCTAAC
CTATTTTCACGCTCAACTTTGTAACTTGCATTGGTGTAGGTATTGCATACTTTCGATGGAAACA
AGAATGCATTCAAGGCACTCATTGCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAA
CTTTCAGATGGGTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG
Conservation Information
Conserved circRNAs osi_circ_012720
PMCS 0.528089654
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017