Detail information of Os02g0782200_circ_g.2


General Information
CircRNA Name Os02g0782200_circ_g.2
ID in PlantcircBase osa_circ_016810
Alias NA
Organism Oryza sativa
Position chr2: 33160453-33160948  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os02g0782200
Parent gene annotation Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07822
00-01);NOT2/NOT3/NOT5 domain containing protein. (Os02t0782200-0
2);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07
82200-03)
Parent gene strand -
Alternative splicing Os02g0782200_circ_g.3 Os02g0782200_circ_g.4 Os02g0782200_circ_g.5 Os02g0782200_circ_g.6 Os02g0782200_circ_g.7 Os02g0782200_circ_g.8 Os02g0782200_circ_g.9 Os02g0782200_circ_g.10
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0782200-02:3
Os02t0782200-03:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTCGTTCATAATGAGGTGTTTTGACCAGAGGCTCAACATTTGGAATTCTGGTGAGCCACACA
CGCACTTCTTTATGGTAGAACCATCCTCGAGTATACctcagagttaggtcatgacactgctctt
agcgtaagcacaaatttcttcctccccttgagaaaaaaggataaaacttgagccaggaggtatc
tgaacaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 318
Transcript exons: 33160453-33160543,33160636-33160717,33160804-33160948
CTCAGAGTTAGGTCATGACACTGCTCTTAGCGTAAGCACAAATTTCTTCCTCCCCTTGAGAAAA
AAGGATAAAACTTGAGCCAGGAGGTATAAGAAATGTTTCACCTAACGTTTTGGGATGAAGGGAT
AGCTGGCTTCTTCTCTATTTGATCATAATGGAGAACAAAGTTGTCCTTGCGGATTGTCTCCCAG
TTGTTTGGATCAAAGCAACCATAAGATCCTCGTTCATAATGAGGTGTTTTGACCAGAGGCTCAA
CATTTGGAATTCTGGTGAGCCACACACGCACTTCTTTATGGTAGAACCATCCTCGAGTATAC

Genomic sequence CTCAGAGTTAGGTCATGACACTGCTCTTAGCGTAAGCACAAATTTCTTCCTCCCCTTGAGAAAA
AAGGATAAAACTTGAGCCAGGAGGTATCTGAACAAAAAATGTGTTGCACATAATAATATAAGAT
AATTGCCTTGTACACAGACACTAGAGAGTAAATCCGAGCTTCTAGAGGTACTTACAAGAAATGT
TTCACCTAACGTTTTGGGATGAAGGGATAGCTGGCTTCTTCTCTATTTGATCATAATGGAGAAC
AAAGTTGTCCTGCAGAAAAACATACACAATTATAATTCACAAATTTTCACAAAAGTATTATGTG
ATACAACTTTACATTGACCAAACATCCAAACCTTGCGGATTGTCTCCCAGTTGTTTGGATCAAA
GCAACCATAAGATCCTCGTTCATAATGAGGTGTTTTGACCAGAGGCTCAACATTTGGAATTCTG
GTGAGCCACACACGCACTTCTTTATGGTAGAACCATCCTCGAGTATAC
Conservation Information
Conserved circRNAs osi_circ_004343*
PMCS 0.24600457
Functional Information
Coding potential Y
Potential coding position 33160701-33160460(+)
Potential amino acid sequence MENKVVLADCLPVVWIKATIRSSFIMRCFDQRLNIWNSGEPHTHFFMVEPSSSIPQS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017