Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0181333_circ_g.10 |
ID in PlantcircBase | osa_circ_006331 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 5581998-5584768 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ui-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0181333 |
Parent gene annotation |
Hypothetical protein. (Os10t0181333-00) |
Parent gene strand | + |
Alternative splicing | Os10g0181333_circ_g.3 Os10g0181333_circ_g.4 Os10g0181333_circ_g.5 Os10g0181333_circ_g.6 Os10g0181333_circ_g.7 Os10g0181333_circ_g.8 Os10g0181333_circ_g.9 Os10g0181333_circ_g.11 Os10g0181333_circ_g.12 Os10g0181333_circ_g.13 Os10g0181333_circ_g.14 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0181200-01:11 Os10t0181200-02:2 Os10t0181333-00:11 Os10t0181200-01:11 Os10t0181200-02:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.26858644 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5584711-5582000(-) |
Potential amino acid sequence |
MNDHDDAKLIGWSISNLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLE SMEQKGLLDMNKIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQ VMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQ VAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHV TVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIG VQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFE EIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQL GLDLFEQLKIDSIDLNPTIVGCLTGRLVPVACLRDGPVSKQKKAMNDHDDAKLIGWSISNLLSK ENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMNKIHHASFLN ACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTL ISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDR VVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRARE VYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARR ADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITA LCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIV GCLTGRLVPVACLRDGPVSKQKKAMNDHDDAKLIGWSISNLLSKENPENSTSANRAGLRGTKDV PDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMNKIHHASFLNACKKQRAVPEAVRFCKLINN PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM VSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAF DVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIA LRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGT IAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRL GVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGRLVPVACLRDGPVSK QKKAMNDHDDAKLIGWSISNLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSV DLLESMEQKGLLDMNKIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFD GALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCA KAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPIL PDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDM NKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKAL QLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNA EAQLGLDLFEQLKIDSIDLNPTIVGCLT(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |