Detail information of Os10g0181333_circ_g.10


General Information
CircRNA Name Os10g0181333_circ_g.10
ID in PlantcircBase osa_circ_006331
Alias NA
Organism Oryza sativa
Position chr10: 5581998-5584768  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os10g0181333
Parent gene annotation Hypothetical protein. (Os10t0181333-00)
Parent gene strand +
Alternative splicing Os10g0181333_circ_g.3 Os10g0181333_circ_g.4 Os10g0181333_circ_g.5 Os10g0181333_circ_g.6 Os10g0181333_circ_g.7 Os10g0181333_circ_g.8 Os10g0181333_circ_g.9 Os10g0181333_circ_g.11 Os10g0181333_circ_g.12 Os10g0181333_circ_g.13 Os10g0181333_circ_g.14
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0181200-01:11
Os10t0181200-02:2
Os10t0181333-00:11
Os10t0181200-01:11
Os10t0181200-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACTCCAGCCAATTAACTTTGCATCATCATGGTCATTCATTGCTTTCTTTTGTTTACTCACAG
GACCATCCCTTAAGCATGCAACTGGAACCAATCGCCcagtaagacaaccaacgattgtgggatt
gaggtcaatactgtctatttttaattgttcaaatagatccaaacccagttgtgcttcagcattc
ctgtgggg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1476
Transcript exons: 5581998-5582089,5582167-5582275,5582636-5582735,5582919-
5583059,5583151-5583315,5583393-5583584,5583714-5583842,
5583924-5584039,5584126-5584270,5584344-5584407,5584546-
5584768
CAGTAAGACAACCAACGATTGTGGGATTGAGGTCAATACTGTCTATTTTTAATTGTTCAAATAG
ATCCAAACCCAGTTGTGCTTCAGCATTCCTTTCACAAGCCACAAATAACACCGAATAGGTTATC
ATATTTGGACAGACTCCTAATCTCTTCATCTCACTAAGGACCTCAAAAGACTTCAAAACTTGAT
CACCATCACACAATGCGGTGATCAGAGCATTCATCATTGAAACGGTTGGCATTAATTTGATTGA
CTTGATCTCCTCAAATAGCTGCAATGCCTTTTTCCAGTCCTTGGCATTGCAGCAAGCACCCATT
AATGAACTGTATGCAATGGTTCCAACTTGATATCCCTTTGCTCTTGCATCTTTCATTATCTCAA
AGGCAGCATCAGCCCTCCTAGCATGGCCAGCAACATCAACTAGAGCACTCAGAAACATCTCATC
AGGTTGTACTCCAATCTTGTTCATATCTTCATAGATCTTCAGAGCAAATCCTAAATCACCAGTC
AAGCTACAGCTTCTCAATGCTATTGTGTAAACTTCTGGAGTACCCTTTATATTGTACTCCTGAA
GCATTTTGTATACCTCACGAGCTCGATCAGCCTGGCCAGCCTGAATACATGTCTTCATCAGAGC
TCCAACTGTGACATGATCAGGAAGAATCGGTTTGGATCCTTTAGATTCAGAGGCTTCTGCTGTC
ATTTCTGATAGAACATCAAAAGCTCGAGCAACCGCTCCAGATTCACCGCATGCACTGATCAAAG
CATTAAAGACAACTCGATCTGGCTTCACCTTCTTTGAACTCATGATACCATAAGCACCAAATGC
TTTTGCTACTTGACCAGCTTTTGCACAGCCATCAATCAGTGCACTATATGTGTTAACATTTGGC
TCTATTCCAGCACTGACCATCTCATGGAAGACCTCAAACATAGCATCAACTTTTCCACACTTGG
CACAAGTCGATATAAGTGTTGTGTAAAGTTTACAATCAGGTTTTAGCCCAGCTTCCTTTAGGAG
CACCATAACTTGGAGAGCCCCATCAAAATCTTGCGAATTAGCGCACACAGATAAAAGCATATTG
AAGGTACTCATTTTTGGGTTATTGATCAACTTGCAAAAACGAACAGCTTCCGGAACAGCCCTTT
GCTTCTTACAGGCATTCAGAAAGCTAGCATGGTGGATCTTATTCATATCAAGCAATCCCTTTTG
CTCCATGCTTTCCAATAGATCCACAGAGTCTTTCAATCTTCCATCAATTAACAAACTATTGTAT
CTCCTCAAGTAATCTGGCACGTCCTTTGTTCCCCTCAATCCAGCTCTATTTGCTGAAGTAGAGT
TTTCTGGATTCTCCTTGCTCAGTAAATTAGAAATACTCCAGCCAATTAACTTTGCATCATCATG
GTCATTCATTGCTTTCTTTTGTTTACTCACAGGACCATCCCTTAAGCATGCAACTGGAACCAAT
CGCC

Genomic sequence CAGTAAGACAACCAACGATTGTGGGATTGAGGTCAATACTGTCTATTTTTAATTGTTCAAATAG
ATCCAAACCCAGTTGTGCTTCAGCATTCCTGTGGGGAAACTATTAGTACCTGAAGAGTGCGATA
AGATTAGTTTGAAGAGTGCAGTTCCAGCTCAGAGTTGTTACCTTTCACAAGCCACAAATAACAC
CGAATAGGTTATCATATTTGGACAGACTCCTAATCTCTTCATCTCACTAAGGACCTCAAAAGAC
TTCAAAACTTGATCACCATCACCTGCATCATCGAGAAACTGTCATTATTTCCATGTCCAAAGAA
GCAAGAGTTTTTAAAGAAAATGATAGGGAACAGCTATGAACATATATATAGAAAATGAAAGTTG
CACCAAGGTTCCTATATTTGACTATAATAGCACTGAGGCTTTTAAAAGTAATTTGGCAGGTCTC
AGAAACACATAATGGACTTCTACTTGGATCCTTCAATTTAGAAAGTTAAGTTATTGTGTCTTTT
TCACTGGCTGAAACTGTGATGTAAGCCACACATCTTTATTAATTGGCAAAACGTTAGTATTAGC
TCACTGAAATGACAAAAAAAACATTTTATTATTGCTACAAGTATTCAGATGTTTGGACATACAC
AATGCGGTGATCAGAGCATTCATCATTGAAACGGTTGGCATTAATTTGATTGACTTGATCTCCT
CAAATAGCTGCAATGCCTTTTTCCAGTCCTTGGCCTGAAACAAGAATTTAAATGTCGTGATAAT
AACACCGAACTCAAATCAAAAGTACATGGAATACAAGTAAAATTGCAAAAGAAAGAATAACTAA
GTGCATAAAAGACCTTGTGCTACTGTGGGGAGCAGAACTTAATAACTTGTTATATTGGTTTTCA
TCCAACAATTTATGTCAGAACTTACATTGCAGCAAGCACCCATTAATGAACTGTATGCAATGGT
TCCAACTTGATATCCCTTTGCTCTTGCATCTTTCATTATCTCAAAGGCAGCATCAGCCCTCCTA
GCATGGCCAGCAACATCAACTAGAGCACTCAGAAACATCTGTAGTGGATGGAATCAAACAAACA
TAACAGTTAAATAAGTCATGTGGGTTAAGCACATATCCCTTTAATGTTCTCTCTAGAAATAACA
CCTCATCAGGTTGTACTCCAATCTTGTTCATATCTTCATAGATCTTCAGAGCAAATCCTAAATC
ACCAGTCAAGCTACAGCTTCTCAATGCTATTGTGTAAACTTCTGGAGTACCCTTTATATTGTAC
TCCTGAAGCATTTTGTATACCTCACGAGCTCGATCAGCCTACACAAACAAATGTTTTTTTGAGT
TAGATACTATATAGCCTATTTCGCGTTTACAACAAAGGATCTGCAGAACACCTGGCCAGCCTGA
ATACATGTCTTCATCAGAGCTCCAACTGTGACATGATCAGGAAGAATCGGTTTGGATCCTTTAG
ATTCAGAGGCTTCTGCTGTCATTTCTGATAGAACATCAAAAGCTCGAGCAACCGCTCCAGATTC
ACCGCATGCACTGATCAAAGCATTAAAGACAACTCGATCTGGCTTCACCTTCTACTGCAAGTAT
GGCCCAGTAAGTTCAACAAACATGGAAAGCGCATAGAAGTGATTCACCAGTAGCATTTGCAGCA
CAGGTGAATGGAAGACATGTAATATAAAAAGAAAAAATATCTACCACTTCACCTTTGAACTCAT
GATACCATAAGCACCAAATGCTTTTGCTACTTGACCAGCTTTTGCACAGCCATCAATCAGTGCA
CTATATGTGTTAACATTTGGCTCTATTCCAGCACTGACCATCTCATGGAAGACCTTAAATATAA
GTACACAATAGATATAAAGCTATCATATTTTTAAGTCAAACATATATGTATGAATATGTCATTT
AGTTACCTCAAACATAGCATCAACTTTTCCACACTTGGCACAAGTCGATATAAGTGTTGTGTAA
AGTTTACAATCAGGTTTTAGCCCAGCTTCCTTTAGGAGCACCATAACTTGGAGAGCCCCTAAAA
GGTAAAAACAGTCATGTCTCATCAGATCTTAATCTAACAAATCACACAAGAAAGCTGCAGTTTT
AAGTTCAAGCAGCTACCATCAAAATCTTGCGAATTAGCGCACACAGATAAAAGCATATTGAAGG
TACTCATTTTTGGGTTATTGATCAACTTGCAAAAACGAACAGCTTCCGGAACAGCCCTTTGCTT
CTTACAGGCATTCAGAAAGCTAGCATGGTGGATCTGAAAGTAGATGGAAATCAGGAAAGAGAAG
AAGATATACACTAAAAAAAGGACTATTAGAACAGGTAACAACCTTATTCATATCAAGCAATCCC
TTTTGCTCCATGCTTTCCAATAGATCCACAGAGTCTTTCAATCTGACCATACCAAATTGAAGTA
TCAAGCAAAAAATATTTATAGCACAAAGAGTGCAGCATATTTAATATGAAAATTCCATGTATGT
AAGGGGTGTTCTGGGAACAGATTAATAGCAATTATTATGTCCAACATTATACCTTCCATCAATT
AACAAACTATTGTATCTCCTCAAGTAATCTGGCACGTCCTTTGTTCCCCTCAATCCAGCTCTAT
TTGCTGAAGTAGAGTTTTCTGGATTCTCCTTGCTCAGTAAATTAGAAATACTCCAGCCAATTAA
CTTTGCATCATCATGGTCATTCATTGCTTTCTTTTGTTTACTCACAGGACCATCCCTTAAGCAT
GCAACTGGAACCAATCGCC
Conservation Information
Conserved circRNAs NA
PMCS 0.26858644
Functional Information
Coding potential Y
Potential coding position 5584711-5582000(-)
Potential amino acid sequence MNDHDDAKLIGWSISNLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLE
SMEQKGLLDMNKIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQ
VMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQ
VAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHV
TVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIG
VQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFE
EIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQL
GLDLFEQLKIDSIDLNPTIVGCLTGRLVPVACLRDGPVSKQKKAMNDHDDAKLIGWSISNLLSK
ENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMNKIHHASFLN
ACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTL
ISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDR
VVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRARE
VYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARR
ADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITA
LCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIV
GCLTGRLVPVACLRDGPVSKQKKAMNDHDDAKLIGWSISNLLSKENPENSTSANRAGLRGTKDV
PDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMNKIHHASFLNACKKQRAVPEAVRFCKLINN
PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM
VSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAF
DVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIA
LRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGT
IAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRL
GVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGRLVPVACLRDGPVSK
QKKAMNDHDDAKLIGWSISNLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSV
DLLESMEQKGLLDMNKIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFD
GALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCA
KAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPIL
PDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDM
NKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKAL
QLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNA
EAQLGLDLFEQLKIDSIDLNPTIVGCLT(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017