Detail information of Os10g0181333_circ_g.5


General Information
CircRNA Name Os10g0181333_circ_g.5
ID in PlantcircBase osa_circ_006326
Alias NA
Organism Oryza sativa
Position chr10: 5580002-5580533  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os10g0181333
Parent gene annotation Hypothetical protein. (Os10t0181333-00)
Parent gene strand +
Alternative splicing Os10g0181333_circ_g.3 Os10g0181333_circ_g.4 Os10g0181333_circ_g.6 Os10g0181333_circ_g.7 Os10g0181333_circ_g.8 Os10g0181333_circ_g.9 Os10g0181333_circ_g.10 Os10g0181333_circ_g.11 Os10g0181333_circ_g.12 Os10g0181333_circ_g.13 Os10g0181333_circ_g.14
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AG
Number of exons covered Os10t0181200-02:1
Os10t0181200-02:1
Os10t0181333-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGTTCTTAGATACATGAGTACTGCACACTTATGTTGTGACTTATTTATTGAGAAAAATATA
TTTATTAAAGCAAGCAAAGTGCAATTAGCAAAATACtatatacgcatgtaatatgttataagga
aaggttataaaaggataaatgcacttggaaatcgtccccctgtcattgacaaaagcaacagcca
agaagaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 532
Transcript exons: 5580002-5580533
TATATACGCATGTAATATGTTATAAGGAAAGGTTATAAAAGGATAAATGCACTTGGAAATCGTC
CCCCTGTCATTGACAAAAGCAACAGCCAAGAAGAAATATGTCTGCAAAACTTATACAGAAGGAA
AATACTAATTATTTAGCTCTCATATTCCTCTCCTATGTAGTAAATTAAGAAACAAAAAAAAAGC
ATATTTTGTAATACACCACTATGCATAATAAAGTTTTAGGTTCTAAAGATGCCTATCCACTATG
CAAAGTAGTCGTGCTAATCAGAGAGGGCAGCATTAGTTGAAATACATGGAAAATATGCAGTTTT
GTAAACTAGCAACAAGTATTAAGTACTGTAGTAACCCAGAAAGCATACTTATTCAGCACACCAG
GTTTATATAACAGAAAGTGGTCAACATAGAACTGGTTTTAACTACAAATAATGTTCTTAGATAC
ATGAGTACTGCACACTTATGTTGTGACTTATTTATTGAGAAAAATATATTTATTAAAGCAAGCA
AAGTGCAATTAGCAAAATAC

Genomic sequence TATATACGCATGTAATATGTTATAAGGAAAGGTTATAAAAGGATAAATGCACTTGGAAATCGTC
CCCCTGTCATTGACAAAAGCAACAGCCAAGAAGAAATATGTCTGCAAAACTTATACAGAAGGAA
AATACTAATTATTTAGCTCTCATATTCCTCTCCTATGTAGTAAATTAAGAAACAAAAAAAAAGC
ATATTTTGTAATACACCACTATGCATAATAAAGTTTTAGGTTCTAAAGATGCCTATCCACTATG
CAAAGTAGTCGTGCTAATCAGAGAGGGCAGCATTAGTTGAAATACATGGAAAATATGCAGTTTT
GTAAACTAGCAACAAGTATTAAGTACTGTAGTAACCCAGAAAGCATACTTATTCAGCACACCAG
GTTTATATAACAGAAAGTGGTCAACATAGAACTGGTTTTAACTACAAATAATGTTCTTAGATAC
ATGAGTACTGCACACTTATGTTGTGACTTATTTATTGAGAAAAATATATTTATTAAAGCAAGCA
AAGTGCAATTAGCAAAATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.337276697
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017