Detail information of Os10g0181333_circ_g.11


General Information
CircRNA Name Os10g0181333_circ_g.11
ID in PlantcircBase osa_circ_006332
Alias NA
Organism Oryza sativa
Position chr10: 5582298-5582635  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os10g0181333
Parent gene annotation Hypothetical protein. (Os10t0181333-00)
Parent gene strand +
Alternative splicing Os10g0181333_circ_g.3 Os10g0181333_circ_g.4 Os10g0181333_circ_g.5 Os10g0181333_circ_g.6 Os10g0181333_circ_g.7 Os10g0181333_circ_g.8 Os10g0181333_circ_g.9 Os10g0181333_circ_g.10 Os10g0181333_circ_g.12 Os10g0181333_circ_g.13 Os10g0181333_circ_g.14
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AC-CA
Number of exons covered NA:0
Os10t0181333-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACACATCTTTATTAATTGGCAAAACGTTAGTATTAGCTCACTGAAATGACAAAAAAAACATTT
TATTATTGCTACAAGTATTCAGATGTTTGGACATACttatttccatgtccaaagaagcaagagt
ttttaaagaaaatgatagggaacagctatgaacatatatatagaaaatgaaagttgcaccaagg
ttcctata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTATTTCCATGTCCAAAGAAGCAAGAGTTTTTAAAGAAAATGATAGGGAACAGCTATGAACATA
TATATAGAAAATGAAAGTTGCACCAAGGTTCCTATATTTGACTATAATAGCACTGAGGCTTTTA
AAAGTAATTTGGCAGGTCTCAGAAACACATAATGGACTTCTACTTGGATCCTTCAATTTAGAAA
GTTAAGTTATTGTGTCTTTTTCACTGGCTGAAACTGTGATGTAAGCCACACATCTTTATTAATT
GGCAAAACGTTAGTATTAGCTCACTGAAATGACAAAAAAAACATTTTATTATTGCTACAAGTAT
TCAGATGTTTGGACATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.145783432
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017