Detail information of Os10g0181333_circ_g.3


General Information
CircRNA Name Os10g0181333_circ_g.3
ID in PlantcircBase osa_circ_006324
Alias NA
Organism Oryza sativa
Position chr10: 5579932-5580940  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method CIRCexplorer
Parent gene Os10g0181333
Parent gene annotation Hypothetical protein. (Os10t0181333-00)
Parent gene strand +
Alternative splicing Os10g0181333_circ_g.4 Os10g0181333_circ_g.5 Os10g0181333_circ_g.6 Os10g0181333_circ_g.7 Os10g0181333_circ_g.8 Os10g0181333_circ_g.9 Os10g0181333_circ_g.10 Os10g0181333_circ_g.11 Os10g0181333_circ_g.12 Os10g0181333_circ_g.13 Os10g0181333_circ_g.14
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0181200-01:3
Os10t0181200-02:2
Os10t0181333-00:2
Os10t0181200-01:3
Os10t0181200-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAAACCTTAAACATCCCAACACTTGAGACAAAACATCACTTGAGGGTAATAGTCCTGTGGAA
ATTGCCTCACGGTAGACCTTAATTGCTGAGGAGGTCctgcagctagtcgatgctttaaagacct
caatgttgtaagaactgaaacctgtcaaaaaaaaaaaggaagtatatacgcatgtaatatgtta
taaggaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 374
Transcript exons: 5579932-5579980,5580534-5580626,5580709-5580940
CTGCAGCTAGTCGATGCTTTAAAGACCTCAATGTTGTAAGAACTGAAACCTCCGCAGTGTAGAT
CTTTGACTTTCGGGCATCAACAAGAATACGGGTATCTTTCATGGAAATACTTTCAACTGCTCCT
AACGAAGCAGCTTCCTCCAGTATTGAAAAGGCACGAATGTCGTATTCACCAAAACCTTCCAACA
GTGAATTCACATTGGGATGATGTGGAATATCACAACTTATTCCCATATTTTCAATGAAAGTATT
TGTTAATGTATTATCATGAGGAAACCTTAAACATCCCAACACTTGAGACAAAACATCACTTGAG
GGTAATAGTCCTGTGGAAATTGCCTCACGGTAGACCTTAATTGCTGAGGAGGTC

Genomic sequence CTGCAGCTAGTCGATGCTTTAAAGACCTCAATGTTGTAAGAACTGAAACCTGTCAAAAAAAAAA
AGGAAGTATATACGCATGTAATATGTTATAAGGAAAGGTTATAAAAGGATAAATGCACTTGGAA
ATCGTCCCCCTGTCATTGACAAAAGCAACAGCCAAGAAGAAATATGTCTGCAAAACTTATACAG
AAGGAAAATACTAATTATTTAGCTCTCATATTCCTCTCCTATGTAGTAAATTAAGAAACAAAAA
AAAAGCATATTTTGTAATACACCACTATGCATAATAAAGTTTTAGGTTCTAAAGATGCCTATCC
ACTATGCAAAGTAGTCGTGCTAATCAGAGAGGGCAGCATTAGTTGAAATACATGGAAAATATGC
AGTTTTGTAAACTAGCAACAAGTATTAAGTACTGTAGTAACCCAGAAAGCATACTTATTCAGCA
CACCAGGTTTATATAACAGAAAGTGGTCAACATAGAACTGGTTTTAACTACAAATAATGTTCTT
AGATACATGAGTACTGCACACTTATGTTGTGACTTATTTATTGAGAAAAATATATTTATTAAAG
CAAGCAAAGTGCAATTAGCAAAATACCTCCGCAGTGTAGATCTTTGACTTTCGGGCATCAACAA
GAATACGGGTATCTTTCATGGAAATACTTTCAACTGCTCCTAACGAAGCAGCTTCCTGTGACAA
GAAGGCATCTGCTTTGATTGATACAAGAATACTGAAATGAAGCCATTGTTTTAGTTCGAATTAG
TATCAGTACCTCCAGTATTGAAAAGGCACGAATGTCGTATTCACCAAAACCTTCCAACAGTGAA
TTCACATTGGGATGATGTGGAATATCACAACTTATTCCCATATTTTCAATGAAAGTATTTGTTA
ATGTATTATCATGAGGAAACCTTAAACATCCCAACACTTGAGACAAAACATCACTTGAGGGTAA
TAGTCCTGTGGAAATTGCCTCACGGTAGACCTTAATTGCTGAGGAGGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.258555335
Functional Information
Coding potential Y
Potential coding position 5580806-5580851(-)
Potential amino acid sequence MGISCDIPHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEV
SVLTTLRSLKHRLAAGPPQQLRSTVRQFPQDYYPQVMFCLKCWDV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017