Detail information of Os11g0562100_circ_g.7


General Information
CircRNA Name Os11g0562100_circ_g.7
ID in PlantcircBase osa_circ_009620
Alias Os_ciR7096
Organism Oryza sativa
Position chr11: 20951792-20956148  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os11g0562100
Parent gene annotation Squalene cyclase domain containing protein. (Os11t0562100-01);Si
milar to cycloartenol synthase. (Os11t0562100-02)
Parent gene strand +
Alternative splicing Os11g0562100_circ_g.1 Os11g0562100_circ_g.2 Os11g0562100_circ_g.3 Os11g0562100_circ_g.4 Os11g0562100_circ_g.5 Os11g0562100_circ_g.6 Os11g0562100_circ_g.8 Os11g0562100_circ_g.9 Os11g0562100_circ_g.10 Os11g0562100_circ_g.11
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0562100-01:9
Os11t0562100-02:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCATTTGGATGTCAGATGGAGCGGGATCCAGCACCACTGCATCGTGCTGCAAAAGAATTAATC
AATATGCAGTTGGAAACAGGAGAGTTCCCCCAACAAtgctgtaggtgttatccggttgatattc
tgccattatatatatgtttcctacacagacacagtatttgatacatgtccgcacagatgcgtgg
gctagctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGCTGTAGGTGTTATCCGGTTGATATTCTGCCATTATATATATGTTTCCTACACAGACACAGTA
TTTGATACATGTCCGCACAGATGCGTGGGCTAGCTTCCTAGTTTTATCTAATGAGGAAACAGAA
AAAAACTGTGACAGATTTTTATCTGAATGATAGATATATGATGGTTGCCAGAGCTGGGAAACAG
CATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGGTTCAACTGTTAGGAG
AGCCCACGAGTTCATGAAAAATTCACAGGTTCAGAGTCTATACTTTAATAATTTAAATTTATAA
ATTAACTAGTGCATAAGGTGATCCAACATAAATTGCATGTTCTTTCTTGAAGATTATGAGGAAT
CATCCTGGTGACCAAAGTTACTGGCATCGCCATAGATCAAAGGGTTCATGGACTCTTTCGTCAG
CAGACAATGGATGGGCTGTGTCTGACACTACAGCAGAAGCGCTGAAGGTCATTATGTTCTTTCT
TCTTCTTCTTTTTTTTTTTACTAATGCACCATTGAAACAAGGGAGGCAAATAATTAATTAATCC
TTGAAACGGTCAAATAAGTACTACTCCCTCCATCCTAGAATATAAAAAGTTTTAGAGTTGGACA
CAGTTATTAAGAAAGTAGGTAGAAGTGAATGGTGGAGGGTTGTAATTGGATGAATAGTGGAGAT
AGGTGGGAAAAGTGAATGGTGGAGTGTTGTGATTGGTTGGGAAAAGAATGTTGGTGGAGAAGTT
GTTATATTTTAGAACAAATCCTAATGGTTAAAAGTTGTTATATTTTGGGACGGAGGTTGTACTA
TCGTATTAACCTAGTCTTAATCAGTGATAGCACACCCAAGAAGCTCATGCTTATACAAAAAATT
GATCACGATCTGTTGCCAGTTCTGCATAAATTTTTATTTTGTCTACTCTTGAAATCTTACATAA
TCTCATTTCCAGGCTGTACTGTTACTGGAAAAGATCTCTAGCAACGTGGTCGGGGATCCAATTG
AAATAGAAAGGCTGCATGATGCTGTTGATTGCCTCCTATCTTTCGTGGTATGGAATTATTTAAG
CACAGCTATTAAACATGATCTTGTAGTTTCCTTGCAGACTAGCCCCAATTCATTATTATGTGAA
AAATTATGGTTTTGTTTACTGTTATTAGTTGTACTAAGCGAAGATAGGTTAAAAGAATCTTACA
CACCAAACAATGGGGTGTGATATGCTAATAGCCTTTTCTGGAACTCAGTATGAGTGCAGCTGTG
AAACCCAAATCCAAGCTCCAATTGACCTTACCAGCCTGGGAGTTCTAAACCAAATTCACAAGGG
GATTAAGGCTGCGATGATTGTGGCATGAATGGAAAGACCCGACAAAACCGTGGGTGGGATTGGA
GATGCCTTGCAACGAAATTGACAGGGATCTCTTCGCCGCATCAACAAAAATAACTGTCGGTGAT
GAGAACACGACACGCTTCTAGGACTCTGCATGGATCGATGGGCGCAGACCAAAAGACCTCATGC
CGCTGGTCTACGCGATTTCCAAAAACAAAGGAAAGTCCCTACGCCAAGAAAAGGAGGATGATGC
CTGGGTACAAGATCTGACCCTCGAAGCAAACTCACCTATCATAGTCAACCTCGTTGACTAGCTA
GTTACCCTGTGGGAAGCGGTTCAGAATGTGCACTTAGACAATGAAGAACCGGACCAGACTGCTT
GGAAATTCACAAGTAACGGGCGTTACATGGCCTCCTCGGCCTACCATGCGTGCAGTGCTGTGGG
GCGCCTAGCCCAAGTCTCAATTCCTTGATTTGGAAAGTTTGGGCACCAGGGAAATGCAAATTCC
ATACTTGGCTCATCATCCAGAATAGAGTCTGGACATCCAACCGGCTTGCGATCAGGGGTTGGCA
AAACAACGGCCAATGCCCTCTCTGCCGTTGTGAAGTTGAGACGGCCTTGTATCTTATCGCCACG
TGTAGATACACCAAGAGGATTTGGCATTTCGTTGCTAGATGGGTGGGCTATCAGCAAATGGAGC
CGGCCCAATGGGAGGAAGCCCAGTCAGTCCAACAGCGGTAGGAGAACCTAGCAAATATGCCCAA
TGTCCCAAAAAAGGGACTTCAATCCCTCATCCTGCTAATTGTCTGGAAAATTTGGAAAGAGAGA
AATCGGCGGATTTTCGACCACAAATAGGTGGCAACGAGCTTCCTCCTAACGAAAATCAAAGAAG
AGGCTAGCCTTTGGGCTCTAGCAGGGGCTAAACGATTGCGCGAGTTCGTCCCGCATTTTGTATA
GCTTACGGTGACCTCTCTCTTTTTTCGCTTTACCCTTAGGGGTTGTATTTTCTCCTGCTCTATT
CAATGAAAAGGCATTCTCGTGCTGTTTTCCGTTTAAAAAAAATCCAAGCTCATAACCTACGCAA
CTTGTTGCCAACTTTATGTAACCAAAATGTCAAAAATCCTAAAAATGGTGATTGTAACTCTGCC
ATGCATATAGTTCCCTTCTCTCTCGCTGCCATGGTTTTAATATGTGAAAATCATCTGGTTAATG
TGTTCATTTCTCCTTGCAGAACAAAGATGGTACCCTTTCTACATATGAATGTAAAAGAACTTAT
ACTTGGATAGAGGTGAGTTTCTGCACACTAATGCCCTGATTGATATGCTTTATAAATAACACCA
GCAACAACTTTATAAATAACATCACGAAAACTCCATGCCTGTGCCTACATCATGACACGATCAA
TCTAATTTATGATGTTAAAATAACACCAGCATGATTCATGCACTTCAAATTTGTGAAACTTATT
CAGCACATCTTGTATGTTTCAGTACACTTATATTGAAGAACTAGTCAATCACCAGTATGTTTCT
TATGGCCATGCGATTTGTAGTCCTGACATGTTTTTTTTATATAACCTAGGTTCTCAGTCCTTGT
GAGAGTTTTCCAAACATAGTGGTTGATTATCCGTAAGTGCTGAGCGCATCATTGTGCTTAGAAA
ATCCTAATAATTAACACCCTTTTCCCTTTGTAGAAATAACTCCTGGCGTAACTGATCACTTTAT
ACCATATGAATTGGCAGATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTTCA
AACAACTACACCCTAGTTACCGTATTAAAGAGATAGAAAAATGTGTCAGAAACGCAGCGATGTT
TATTGAGAGCACACAAGGCGAAGATGGTTCATGGTTTGTAACAAGAGCACCACATATACTGACT
TTCTGTCTTTGGATAATTTTTCTCTTCTATTTTAACAATTTGTAACACAATAACTTGGTTATTT
GGCAGGCTAGGCACTTGGGGTGTGTGTTTCACCTATGGGGCCTTTCTTTCAGTAAAAGGGTTAA
TTGCTGCTGGAAGAACATATGAGAATAGTTCTTCCATCAGGAAAGCATGCGACTTTATATTATC
AAAGCAGCTCGATACTGGTGGGTGGGGAGAAAGTTATGTCTCTAATATTACTAAGGTAGGTTTT
TTTTTTTTAATCTCTAGCTCGCTAGATCATTCCTTTTGAATTTTTGTGGTTGAATAAACATATA
TTGCTCGTTTTGTTGCAAGTTTTATGATAATTGGCATATAGGATACATAGCGGTGGGTTGATTA
CCATAGTTTTTTAAAGGAGTACTCCTGGCCTTTACGGAAGGTATTGTGGAGCGAACACTCACAA
CCCTAGTGGCTTATTAGCGTATAATTAATTAAATATTAACTATTTTTTTAAAAAAATAGATTAA
TATGATTTTTTAAAGTAACTTTCGTATATAAAACTATTGCAAAAAGATACACCGTTTAGCAGTT
TGAAAAATGTGCGCGTGAAAAAAGAGAGGTGAGTTGGGAAATGAGGAGGAAGAATATAGCCTAA
GCACCCTGCTGAGTTTGGGGCTTGAACATAGACAAGCTCATCCATTTGATCTGTTGTGCATGTT
GGAGTTATTCCTTTTCATTTGCAACAAGAGTTGCTTCCATTTGGAAGAAATCTTATGAGGGAAG
AAGTTGGACTGGTGCAAATTTTTATAAATCCATTTGGAAGATTTCGTCACTGATTTTTATTTTT
TATGATACCAAACAGGTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGCCT
GGGCAATGTTAGCTTTAATTTGTGCAGGACAGGTGTGTTTTGTTTATTTTCAATTCAATTCTGA
TAGGAATGACCTTTTTATCGAATGATCTCTATAACCATTTGGATGTCAGATGGAGCGGGATCCA
GCACCACTGCATCGTGCTGCAAAAGAATTAATCAATATGCAGTTGGAAACAGGAGAGTTCCCCC
AACAA
Conservation Information
Conserved circRNAs NA
PMCS 0.102667108
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015