Detail information of Os11g0562100_circ_g.3


General Information
CircRNA Name Os11g0562100_circ_g.3
ID in PlantcircBase osa_circ_009616
Alias NA
Organism Oryza sativa
Position chr11: 20947082-20952862  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0562100
Parent gene annotation Squalene cyclase domain containing protein. (Os11t0562100-01);Si
milar to cycloartenol synthase. (Os11t0562100-02)
Parent gene strand +
Alternative splicing Os11g0562100_circ_g.1 Os11g0562100_circ_g.2 Os11g0562100_circ_g.4 Os11g0562100_circ_g.5 Os11g0562100_circ_g.6 Os11g0562100_circ_g.7 Os11g0562100_circ_g.8 Os11g0562100_circ_g.9 Os11g0562100_circ_g.10 Os11g0562100_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0562100-02:5
Os11t0562100-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTGTACTGTTACTGGAAAAGATCTCTAGCAACGTGGTCGGGGATCCAATTGAAATAGAAAGG
CTGCATGATGCTGTTGATTGCCTCCTATCTTTCGTGgaggatttggtctgcccgcgcacgctgc
tgcagaatgtggtgtggacttcgctctacaagtgggtggagccggtgctaggcagcaggccgat
gaacaagc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 648
Transcript exons: 20947082-20947270,20948687-20948800,20951953-20952075,20
952164-20952286,20952764-20952862
GAGGATTTGGTCTGCCCGCGCACGCTGCTGCAGAATGTGGTGTGGACTTCGCTCTACAAGTGGG
TGGAGCCGGTGCTAGGCAGCAGGCCGATGAACAAGCTGAGGGAGAGAGCTTTGGATAGACTCAT
GGAGCATATCCATTACGAAGATGAAAACTCACAGTACCTCTGCCTATGTCCTGTCAACAAGGCT
CTTAACATGGTCTGCTGCTGGGTGGAAGATCCAAATTCAGATTCATTCAAGCGGCATCTTGCAA
GGATACCTGATTTCCTGTGGCTTTCAGAAGATGGCATGAAGGCACAGATATATGATGGTTGCCA
GAGCTGGGAAACAGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGGT
TCAACTGTTAGGAGAGCCCACGAGTTCATGAAAAATTCACAGATTATGAGGAATCATCCTGGTG
ACCAAAGTTACTGGCATCGCCATAGATCAAAGGGTTCATGGACTCTTTCGTCAGCAGACAATGG
ATGGGCTGTGTCTGACACTACAGCAGAAGCGCTGAAGGCTGTACTGTTACTGGAAAAGATCTCT
AGCAACGTGGTCGGGGATCCAATTGAAATAGAAAGGCTGCATGATGCTGTTGATTGCCTCCTAT
CTTTCGTG

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.417201917
Functional Information
Coding potential Y
Potential coding position 20947173-20952859(+)
20952832-20947157(+)
Potential amino acid sequence MNKLRERALDRLMEHIHYEDENSQYLCLCPVNKALNMVCCWVEDPNSDSFKRHLARIPDFLWLS
EDGMKAQIYDGCQSWETAFIIQAFCATDLVNEYGSTVRRAHEFMKNSQIMRNHPGDQSYWHRHR
SKGSWTLSSADNGWAVSDTTAEALKAVLLLEKISSNVVGDPIEIERLHDAVDCLLSFVEDLVCP
RTLLQNVVWTSLYKWVEPVLGSRPMNKLRERALDRLMEHIHYEDENSQYLCLCPVNKALNMVCC
WVEDPNSDSFKRHLARIPDFLWLSEDGMKAQIYDGCQSWETAFIIQAFCATDLVNEYGSTVRRA
HEFMKNSQIMRNHPGDQSYWHRHRSKGSWTLSSADNGWAVSDTTAEALKAVLLLEKISSNVVGD
PIEIERLHDAVDCLLSFVEDLVCPRTLLQNVVWTSLYKWVEPVLGSRPMNKLRERALDRLMEHI
HYEDENSQYLCLCPVNKALNMVCCWVEDPNSDSFKRHLARIPDFLWLSEDGMKAQIYDGCQSWE
TAFIIQAFCATDLVNEYGSTVRRAHEFMKNSQIMRNHPGDQSYWHRHRSKGSWTLSSADNGWAV
SDTTAEALKAVLLLEKISSNVVGDPIEIERLHDAVDCLLSFVEDLVCPRTLLQNVVWTSLYKWV
EPVLGSRPMNKLRERALDRLMEHIHYEDENSQYLCLCPVNKALNMVCCWVEDPNSDSFKRHLAR
IPDFLWLSEDGMKAQIYDGCQSWETAFIIQAFCATDLVNEYGSTVRRAHEFMKNSQIMRNHPGD
QSYWHRHRSKGSWTLSSADNGWAVSDTTAEALKAVLLLEKISSNVVGDPIEIERLHDAVDCLLS
FV(+)
MMLLIASYLSWRIWSARARCCRMWCGLRSTSGWSRC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017