Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0562100_circ_g.3 |
ID in PlantcircBase | osa_circ_009616 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 20947082-20952862 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0562100 |
Parent gene annotation |
Squalene cyclase domain containing protein. (Os11t0562100-01);Si milar to cycloartenol synthase. (Os11t0562100-02) |
Parent gene strand | + |
Alternative splicing | Os11g0562100_circ_g.1 Os11g0562100_circ_g.2 Os11g0562100_circ_g.4 Os11g0562100_circ_g.5 Os11g0562100_circ_g.6 Os11g0562100_circ_g.7 Os11g0562100_circ_g.8 Os11g0562100_circ_g.9 Os11g0562100_circ_g.10 Os11g0562100_circ_g.11 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0562100-02:5 Os11t0562100-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.417201917 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
20947173-20952859(+) 20952832-20947157(+) |
Potential amino acid sequence |
MNKLRERALDRLMEHIHYEDENSQYLCLCPVNKALNMVCCWVEDPNSDSFKRHLARIPDFLWLS EDGMKAQIYDGCQSWETAFIIQAFCATDLVNEYGSTVRRAHEFMKNSQIMRNHPGDQSYWHRHR SKGSWTLSSADNGWAVSDTTAEALKAVLLLEKISSNVVGDPIEIERLHDAVDCLLSFVEDLVCP RTLLQNVVWTSLYKWVEPVLGSRPMNKLRERALDRLMEHIHYEDENSQYLCLCPVNKALNMVCC WVEDPNSDSFKRHLARIPDFLWLSEDGMKAQIYDGCQSWETAFIIQAFCATDLVNEYGSTVRRA HEFMKNSQIMRNHPGDQSYWHRHRSKGSWTLSSADNGWAVSDTTAEALKAVLLLEKISSNVVGD PIEIERLHDAVDCLLSFVEDLVCPRTLLQNVVWTSLYKWVEPVLGSRPMNKLRERALDRLMEHI HYEDENSQYLCLCPVNKALNMVCCWVEDPNSDSFKRHLARIPDFLWLSEDGMKAQIYDGCQSWE TAFIIQAFCATDLVNEYGSTVRRAHEFMKNSQIMRNHPGDQSYWHRHRSKGSWTLSSADNGWAV SDTTAEALKAVLLLEKISSNVVGDPIEIERLHDAVDCLLSFVEDLVCPRTLLQNVVWTSLYKWV EPVLGSRPMNKLRERALDRLMEHIHYEDENSQYLCLCPVNKALNMVCCWVEDPNSDSFKRHLAR IPDFLWLSEDGMKAQIYDGCQSWETAFIIQAFCATDLVNEYGSTVRRAHEFMKNSQIMRNHPGD QSYWHRHRSKGSWTLSSADNGWAVSDTTAEALKAVLLLEKISSNVVGDPIEIERLHDAVDCLLS FV(+) MMLLIASYLSWRIWSARARCCRMWCGLRSTSGWSRC*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |