Plant Circular RNA Database

Detail information of Os11g0562100_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os11g0562100_circ_g.8
					
						ID in PlantcircBase
						osa_circ_009621
					
						Alias
						Os_ciR4590
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 20951918-20956148  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os11g0562100						
					
						Parent gene annotation
						
							Squalene cyclase domain containing protein. (Os11t0562100-01);Si
milar to cycloartenol synthase. (Os11t0562100-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os11g0562100_circ_g.1 Os11g0562100_circ_g.2 Os11g0562100_circ_g.3 Os11g0562100_circ_g.4 Os11g0562100_circ_g.5 Os11g0562100_circ_g.6 Os11g0562100_circ_g.7 Os11g0562100_circ_g.9 Os11g0562100_circ_g.10 Os11g0562100_circ_g.11 						
					
						Support reads
						4
					
						Tissues
						root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0562100-02:9
Os11t0562100-01:9

General Information
CircRNA Name	Os11g0562100_circ_g.8
ID in PlantcircBase	osa_circ_009621
Alias	Os_ciR4590
Organism	Oryza sativa
Position	chr11: 20951918-20956148 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ei-circRNA
Identification method	find_circ
Parent gene	Os11g0562100
Parent gene annotation	Squalene cyclase domain containing protein. (Os11t0562100-01);Si milar to cycloartenol synthase. (Os11t0562100-02)
Parent gene strand	+
Alternative splicing	Os11g0562100_circ_g.1 Os11g0562100_circ_g.2 Os11g0562100_circ_g.3 Os11g0562100_circ_g.4 Os11g0562100_circ_g.5 Os11g0562100_circ_g.6 Os11g0562100_circ_g.7 Os11g0562100_circ_g.9 Os11g0562100_circ_g.10 Os11g0562100_circ_g.11
Support reads	4
Tissues	root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0562100-02:9 Os11t0562100-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACCATTTGGATGTCAGATGGAGCGGGATCCAGCACCACTGCATCGTGCTGCAAAAGAATTAATC
AATATGCAGTTGGAAACAGGAGAGTTCCCCCAACAAaaaaaaactgtgacagatttttatctga
atgatagatatatgatggttgccagagctgggaaacagcatttataattcaagcgttttgtgct
actgatct

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AAAAAAACTGTGACAGATTTTTATCTGAATGATAGATATATGATGGTTGCCAGAGCTGGGAAAC
AGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGGTTCAACTGTTAGG
AGAGCCCACGAGTTCATGAAAAATTCACAGGTTCAGAGTCTATACTTTAATAATTTAAATTTAT
AAATTAACTAGTGCATAAGGTGATCCAACATAAATTGCATGTTCTTTCTTGAAGATTATGAGGA
ATCATCCTGGTGACCAAAGTTACTGGCATCGCCATAGATCAAAGGGTTCATGGACTCTTTCGTC
AGCAGACAATGGATGGGCTGTGTCTGACACTACAGCAGAAGCGCTGAAGGTCATTATGTTCTTT
CTTCTTCTTCTTTTTTTTTTTACTAATGCACCATTGAAACAAGGGAGGCAAATAATTAATTAAT
CCTTGAAACGGTCAAATAAGTACTACTCCCTCCATCCTAGAATATAAAAAGTTTTAGAGTTGGA
CACAGTTATTAAGAAAGTAGGTAGAAGTGAATGGTGGAGGGTTGTAATTGGATGAATAGTGGAG
ATAGGTGGGAAAAGTGAATGGTGGAGTGTTGTGATTGGTTGGGAAAAGAATGTTGGTGGAGAAG
TTGTTATATTTTAGAACAAATCCTAATGGTTAAAAGTTGTTATATTTTGGGACGGAGGTTGTAC
TATCGTATTAACCTAGTCTTAATCAGTGATAGCACACCCAAGAAGCTCATGCTTATACAAAAAA
TTGATCACGATCTGTTGCCAGTTCTGCATAAATTTTTATTTTGTCTACTCTTGAAATCTTACAT
AATCTCATTTCCAGGCTGTACTGTTACTGGAAAAGATCTCTAGCAACGTGGTCGGGGATCCAAT
TGAAATAGAAAGGCTGCATGATGCTGTTGATTGCCTCCTATCTTTCGTGGTATGGAATTATTTA
AGCACAGCTATTAAACATGATCTTGTAGTTTCCTTGCAGACTAGCCCCAATTCATTATTATGTG
AAAAATTATGGTTTTGTTTACTGTTATTAGTTGTACTAAGCGAAGATAGGTTAAAAGAATCTTA
CACACCAAACAATGGGGTGTGATATGCTAATAGCCTTTTCTGGAACTCAGTATGAGTGCAGCTG
TGAAACCCAAATCCAAGCTCCAATTGACCTTACCAGCCTGGGAGTTCTAAACCAAATTCACAAG
GGGATTAAGGCTGCGATGATTGTGGCATGAATGGAAAGACCCGACAAAACCGTGGGTGGGATTG
GAGATGCCTTGCAACGAAATTGACAGGGATCTCTTCGCCGCATCAACAAAAATAACTGTCGGTG
ATGAGAACACGACACGCTTCTAGGACTCTGCATGGATCGATGGGCGCAGACCAAAAGACCTCAT
GCCGCTGGTCTACGCGATTTCCAAAAACAAAGGAAAGTCCCTACGCCAAGAAAAGGAGGATGAT
GCCTGGGTACAAGATCTGACCCTCGAAGCAAACTCACCTATCATAGTCAACCTCGTTGACTAGC
TAGTTACCCTGTGGGAAGCGGTTCAGAATGTGCACTTAGACAATGAAGAACCGGACCAGACTGC
TTGGAAATTCACAAGTAACGGGCGTTACATGGCCTCCTCGGCCTACCATGCGTGCAGTGCTGTG
GGGCGCCTAGCCCAAGTCTCAATTCCTTGATTTGGAAAGTTTGGGCACCAGGGAAATGCAAATT
CCATACTTGGCTCATCATCCAGAATAGAGTCTGGACATCCAACCGGCTTGCGATCAGGGGTTGG
CAAAACAACGGCCAATGCCCTCTCTGCCGTTGTGAAGTTGAGACGGCCTTGTATCTTATCGCCA
CGTGTAGATACACCAAGAGGATTTGGCATTTCGTTGCTAGATGGGTGGGCTATCAGCAAATGGA
GCCGGCCCAATGGGAGGAAGCCCAGTCAGTCCAACAGCGGTAGGAGAACCTAGCAAATATGCCC
AATGTCCCAAAAAAGGGACTTCAATCCCTCATCCTGCTAATTGTCTGGAAAATTTGGAAAGAGA
GAAATCGGCGGATTTTCGACCACAAATAGGTGGCAACGAGCTTCCTCCTAACGAAAATCAAAGA
AGAGGCTAGCCTTTGGGCTCTAGCAGGGGCTAAACGATTGCGCGAGTTCGTCCCGCATTTTGTA
TAGCTTACGGTGACCTCTCTCTTTTTTCGCTTTACCCTTAGGGGTTGTATTTTCTCCTGCTCTA
TTCAATGAAAAGGCATTCTCGTGCTGTTTTCCGTTTAAAAAAAATCCAAGCTCATAACCTACGC
AACTTGTTGCCAACTTTATGTAACCAAAATGTCAAAAATCCTAAAAATGGTGATTGTAACTCTG
CCATGCATATAGTTCCCTTCTCTCTCGCTGCCATGGTTTTAATATGTGAAAATCATCTGGTTAA
TGTGTTCATTTCTCCTTGCAGAACAAAGATGGTACCCTTTCTACATATGAATGTAAAAGAACTT
ATACTTGGATAGAGGTGAGTTTCTGCACACTAATGCCCTGATTGATATGCTTTATAAATAACAC
CAGCAACAACTTTATAAATAACATCACGAAAACTCCATGCCTGTGCCTACATCATGACACGATC
AATCTAATTTATGATGTTAAAATAACACCAGCATGATTCATGCACTTCAAATTTGTGAAACTTA
TTCAGCACATCTTGTATGTTTCAGTACACTTATATTGAAGAACTAGTCAATCACCAGTATGTTT
CTTATGGCCATGCGATTTGTAGTCCTGACATGTTTTTTTTATATAACCTAGGTTCTCAGTCCTT
GTGAGAGTTTTCCAAACATAGTGGTTGATTATCCGTAAGTGCTGAGCGCATCATTGTGCTTAGA
AAATCCTAATAATTAACACCCTTTTCCCTTTGTAGAAATAACTCCTGGCGTAACTGATCACTTT
ATACCATATGAATTGGCAGATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTT
CAAACAACTACACCCTAGTTACCGTATTAAAGAGATAGAAAAATGTGTCAGAAACGCAGCGATG
TTTATTGAGAGCACACAAGGCGAAGATGGTTCATGGTTTGTAACAAGAGCACCACATATACTGA
CTTTCTGTCTTTGGATAATTTTTCTCTTCTATTTTAACAATTTGTAACACAATAACTTGGTTAT
TTGGCAGGCTAGGCACTTGGGGTGTGTGTTTCACCTATGGGGCCTTTCTTTCAGTAAAAGGGTT
AATTGCTGCTGGAAGAACATATGAGAATAGTTCTTCCATCAGGAAAGCATGCGACTTTATATTA
TCAAAGCAGCTCGATACTGGTGGGTGGGGAGAAAGTTATGTCTCTAATATTACTAAGGTAGGTT
TTTTTTTTTTAATCTCTAGCTCGCTAGATCATTCCTTTTGAATTTTTGTGGTTGAATAAACATA
TATTGCTCGTTTTGTTGCAAGTTTTATGATAATTGGCATATAGGATACATAGCGGTGGGTTGAT
TACCATAGTTTTTTAAAGGAGTACTCCTGGCCTTTACGGAAGGTATTGTGGAGCGAACACTCAC
AACCCTAGTGGCTTATTAGCGTATAATTAATTAAATATTAACTATTTTTTTAAAAAAATAGATT
AATATGATTTTTTAAAGTAACTTTCGTATATAAAACTATTGCAAAAAGATACACCGTTTAGCAG
TTTGAAAAATGTGCGCGTGAAAAAAGAGAGGTGAGTTGGGAAATGAGGAGGAAGAATATAGCCT
AAGCACCCTGCTGAGTTTGGGGCTTGAACATAGACAAGCTCATCCATTTGATCTGTTGTGCATG
TTGGAGTTATTCCTTTTCATTTGCAACAAGAGTTGCTTCCATTTGGAAGAAATCTTATGAGGGA
AGAAGTTGGACTGGTGCAAATTTTTATAAATCCATTTGGAAGATTTCGTCACTGATTTTTATTT
TTTATGATACCAAACAGGTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGC
CTGGGCAATGTTAGCTTTAATTTGTGCAGGACAGGTGTGTTTTGTTTATTTTCAATTCAATTCT
GATAGGAATGACCTTTTTATCGAATGATCTCTATAACCATTTGGATGTCAGATGGAGCGGGATC
CAGCACCACTGCATCGTGCTGCAAAAGAATTAATCAATATGCAGTTGGAAACAGGAGAGTTCCC
CCAACAA
						
					

			
		

Sequences
Splice junction sequence	ACCATTTGGATGTCAGATGGAGCGGGATCCAGCACCACTGCATCGTGCTGCAAAAGAATTAATC AATATGCAGTTGGAAACAGGAGAGTTCCCCCAACAAaaaaaaactgtgacagatttttatctga atgatagatatatgatggttgccagagctgggaaacagcatttataattcaagcgttttgtgct actgatct
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AAAAAAACTGTGACAGATTTTTATCTGAATGATAGATATATGATGGTTGCCAGAGCTGGGAAAC AGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGGTTCAACTGTTAGG AGAGCCCACGAGTTCATGAAAAATTCACAGGTTCAGAGTCTATACTTTAATAATTTAAATTTAT AAATTAACTAGTGCATAAGGTGATCCAACATAAATTGCATGTTCTTTCTTGAAGATTATGAGGA ATCATCCTGGTGACCAAAGTTACTGGCATCGCCATAGATCAAAGGGTTCATGGACTCTTTCGTC AGCAGACAATGGATGGGCTGTGTCTGACACTACAGCAGAAGCGCTGAAGGTCATTATGTTCTTT CTTCTTCTTCTTTTTTTTTTTACTAATGCACCATTGAAACAAGGGAGGCAAATAATTAATTAAT CCTTGAAACGGTCAAATAAGTACTACTCCCTCCATCCTAGAATATAAAAAGTTTTAGAGTTGGA CACAGTTATTAAGAAAGTAGGTAGAAGTGAATGGTGGAGGGTTGTAATTGGATGAATAGTGGAG ATAGGTGGGAAAAGTGAATGGTGGAGTGTTGTGATTGGTTGGGAAAAGAATGTTGGTGGAGAAG TTGTTATATTTTAGAACAAATCCTAATGGTTAAAAGTTGTTATATTTTGGGACGGAGGTTGTAC TATCGTATTAACCTAGTCTTAATCAGTGATAGCACACCCAAGAAGCTCATGCTTATACAAAAAA TTGATCACGATCTGTTGCCAGTTCTGCATAAATTTTTATTTTGTCTACTCTTGAAATCTTACAT AATCTCATTTCCAGGCTGTACTGTTACTGGAAAAGATCTCTAGCAACGTGGTCGGGGATCCAAT TGAAATAGAAAGGCTGCATGATGCTGTTGATTGCCTCCTATCTTTCGTGGTATGGAATTATTTA AGCACAGCTATTAAACATGATCTTGTAGTTTCCTTGCAGACTAGCCCCAATTCATTATTATGTG AAAAATTATGGTTTTGTTTACTGTTATTAGTTGTACTAAGCGAAGATAGGTTAAAAGAATCTTA CACACCAAACAATGGGGTGTGATATGCTAATAGCCTTTTCTGGAACTCAGTATGAGTGCAGCTG TGAAACCCAAATCCAAGCTCCAATTGACCTTACCAGCCTGGGAGTTCTAAACCAAATTCACAAG GGGATTAAGGCTGCGATGATTGTGGCATGAATGGAAAGACCCGACAAAACCGTGGGTGGGATTG GAGATGCCTTGCAACGAAATTGACAGGGATCTCTTCGCCGCATCAACAAAAATAACTGTCGGTG ATGAGAACACGACACGCTTCTAGGACTCTGCATGGATCGATGGGCGCAGACCAAAAGACCTCAT GCCGCTGGTCTACGCGATTTCCAAAAACAAAGGAAAGTCCCTACGCCAAGAAAAGGAGGATGAT GCCTGGGTACAAGATCTGACCCTCGAAGCAAACTCACCTATCATAGTCAACCTCGTTGACTAGC TAGTTACCCTGTGGGAAGCGGTTCAGAATGTGCACTTAGACAATGAAGAACCGGACCAGACTGC TTGGAAATTCACAAGTAACGGGCGTTACATGGCCTCCTCGGCCTACCATGCGTGCAGTGCTGTG GGGCGCCTAGCCCAAGTCTCAATTCCTTGATTTGGAAAGTTTGGGCACCAGGGAAATGCAAATT CCATACTTGGCTCATCATCCAGAATAGAGTCTGGACATCCAACCGGCTTGCGATCAGGGGTTGG CAAAACAACGGCCAATGCCCTCTCTGCCGTTGTGAAGTTGAGACGGCCTTGTATCTTATCGCCA CGTGTAGATACACCAAGAGGATTTGGCATTTCGTTGCTAGATGGGTGGGCTATCAGCAAATGGA GCCGGCCCAATGGGAGGAAGCCCAGTCAGTCCAACAGCGGTAGGAGAACCTAGCAAATATGCCC AATGTCCCAAAAAAGGGACTTCAATCCCTCATCCTGCTAATTGTCTGGAAAATTTGGAAAGAGA GAAATCGGCGGATTTTCGACCACAAATAGGTGGCAACGAGCTTCCTCCTAACGAAAATCAAAGA AGAGGCTAGCCTTTGGGCTCTAGCAGGGGCTAAACGATTGCGCGAGTTCGTCCCGCATTTTGTA TAGCTTACGGTGACCTCTCTCTTTTTTCGCTTTACCCTTAGGGGTTGTATTTTCTCCTGCTCTA TTCAATGAAAAGGCATTCTCGTGCTGTTTTCCGTTTAAAAAAAATCCAAGCTCATAACCTACGC AACTTGTTGCCAACTTTATGTAACCAAAATGTCAAAAATCCTAAAAATGGTGATTGTAACTCTG CCATGCATATAGTTCCCTTCTCTCTCGCTGCCATGGTTTTAATATGTGAAAATCATCTGGTTAA TGTGTTCATTTCTCCTTGCAGAACAAAGATGGTACCCTTTCTACATATGAATGTAAAAGAACTT ATACTTGGATAGAGGTGAGTTTCTGCACACTAATGCCCTGATTGATATGCTTTATAAATAACAC CAGCAACAACTTTATAAATAACATCACGAAAACTCCATGCCTGTGCCTACATCATGACACGATC AATCTAATTTATGATGTTAAAATAACACCAGCATGATTCATGCACTTCAAATTTGTGAAACTTA TTCAGCACATCTTGTATGTTTCAGTACACTTATATTGAAGAACTAGTCAATCACCAGTATGTTT CTTATGGCCATGCGATTTGTAGTCCTGACATGTTTTTTTTATATAACCTAGGTTCTCAGTCCTT GTGAGAGTTTTCCAAACATAGTGGTTGATTATCCGTAAGTGCTGAGCGCATCATTGTGCTTAGA AAATCCTAATAATTAACACCCTTTTCCCTTTGTAGAAATAACTCCTGGCGTAACTGATCACTTT ATACCATATGAATTGGCAGATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTT CAAACAACTACACCCTAGTTACCGTATTAAAGAGATAGAAAAATGTGTCAGAAACGCAGCGATG TTTATTGAGAGCACACAAGGCGAAGATGGTTCATGGTTTGTAACAAGAGCACCACATATACTGA CTTTCTGTCTTTGGATAATTTTTCTCTTCTATTTTAACAATTTGTAACACAATAACTTGGTTAT TTGGCAGGCTAGGCACTTGGGGTGTGTGTTTCACCTATGGGGCCTTTCTTTCAGTAAAAGGGTT AATTGCTGCTGGAAGAACATATGAGAATAGTTCTTCCATCAGGAAAGCATGCGACTTTATATTA TCAAAGCAGCTCGATACTGGTGGGTGGGGAGAAAGTTATGTCTCTAATATTACTAAGGTAGGTT TTTTTTTTTTAATCTCTAGCTCGCTAGATCATTCCTTTTGAATTTTTGTGGTTGAATAAACATA TATTGCTCGTTTTGTTGCAAGTTTTATGATAATTGGCATATAGGATACATAGCGGTGGGTTGAT TACCATAGTTTTTTAAAGGAGTACTCCTGGCCTTTACGGAAGGTATTGTGGAGCGAACACTCAC AACCCTAGTGGCTTATTAGCGTATAATTAATTAAATATTAACTATTTTTTTAAAAAAATAGATT AATATGATTTTTTAAAGTAACTTTCGTATATAAAACTATTGCAAAAAGATACACCGTTTAGCAG TTTGAAAAATGTGCGCGTGAAAAAAGAGAGGTGAGTTGGGAAATGAGGAGGAAGAATATAGCCT AAGCACCCTGCTGAGTTTGGGGCTTGAACATAGACAAGCTCATCCATTTGATCTGTTGTGCATG TTGGAGTTATTCCTTTTCATTTGCAACAAGAGTTGCTTCCATTTGGAAGAAATCTTATGAGGGA AGAAGTTGGACTGGTGCAAATTTTTATAAATCCATTTGGAAGATTTCGTCACTGATTTTTATTT TTTATGATACCAAACAGGTTTACGTAAACATTAAAGATGATCAAGCTCATGCAGTGAATACTGC CTGGGCAATGTTAGCTTTAATTTGTGCAGGACAGGTGTGTTTTGTTTATTTTCAATTCAATTCT GATAGGAATGACCTTTTTATCGAATGATCTCTATAACCATTTGGATGTCAGATGGAGCGGGATC CAGCACCACTGCATCGTGCTGCAAAAGAATTAATCAATATGCAGTTGGAAACAGGAGAGTTCCC CCAACAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.209909539

Conservation Information
Conserved circRNAs	NA
PMCS	0.209909539

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os11g0562100_circ_g.8

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