Detail information of Os11g0204600_circ_g.4


General Information
CircRNA Name Os11g0204600_circ_g.4
ID in PlantcircBase osa_circ_008788
Alias NA
Organism Oryza sativa
Position chr11: 5278561-5279006  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0204600
Parent gene annotation Similar to Glucose-1-phosphate adenylyltransferase. (Os11t020460
0-01)
Parent gene strand +
Alternative splicing Os11g0202300_circ_ag.1 Os11g0202300_circ_ag.2 Os11g0202300_circ_ag.3 Os11g0202450_circ_ag.1 Os11g0202600_circ_g.1 Os11g0202600_circ_g.2 Os11g0202600_circ_g.3 Os11g0202600_circ_g.4 Os11g0205500_circ_igg.1 Os11g0204600_circ_g.1 Os11g0204600_circ_g.2 Os11g0204600_circ_g.3 Os11g0205500_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATTTGGTAATAGTCATGTCCACTTTCAGTCTGTATTGCCTACTTGCATCAAATTCAGTATAT
ACAATCATGAATCATGTCCACCTTGTGGTGTGAACTgtgtattgattgtacaatatttcaaaag
ttagctaattttatcagcatttgtgtcagaatgcagtgcatcctgatttgcttttctttgttat
ggaagcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTATTGATTGTACAATATTTCAAAAGTTAGCTAATTTTATCAGCATTTGTGTCAGAATGCAG
TGCATCCTGATTTGCTTTTCTTTGTTATGGAAGCCAAGCGTCTGACTTGGAAGCAATGGTTAGA
AGTAACCTTGTGCCAGGCTCAGATATATGTTTGAACTTCCAGGACATGAAACAACTTGTAGTAT
CTGAAGTATAAGCCATTGATCATTGTAGAAAGTGGATATCAGCTTTCTCAATTTTTCCATAGAC
GACCCGACTAAATTTCCCTACAAGTAAATTTTTTAAGCTTGTGCGCTATGTGACTCATTTTCAC
TGTTTGGGAAATCATGCCTTATGTTCCAATTTGGTAATAGTCATGTCCACTTTCAGTCTGTATT
GCCTACTTGCATCAAATTCAGTATATACAATCATGAATCATGTCCACCTTGTGGTGTGAACT
Conservation Information
Conserved circRNAs NA
PMCS 0.120515751
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017