Detail information of 5_circ_ag.8


General Information
CircRNA Name 5_circ_ag.8
ID in PlantcircBase ath_circ_037848
Alias NA
Organism Arabidpsis thaliana
Position chr5: 4095651-4100295  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.2 5_circ_ag.3 5_circ_ag.4 AT5G12950_circ_g.1 5_circ_ag.2 AT5G12950_circ_g.3 AT5G12950_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.9 5_circ_ag.10
Support reads 48
Tissues root, aerial, inflorescences, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGAAATCTGCTGGTCTTTCAATATCTCAGAAAGTTAATCCTGTTGTGTCGTGGGATCCGTAC
ATGCGTGTGACATTCACTCTTTCTTCTTCCAAAGTGggagtggcgaaggagtcgactttgaatc
taagaattcctgtttggactaactctataggtgccaaagtatctttgaatgggcgacccttaaa
cgtaccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGTGGCGAAGGAGTCGACTTTGAATCTAAGAATTCCTGTTTGGACTAACTCTATAGGTGCCA
AAGTATCTTTGAATGGGCGACCCTTAAACGTACCAACTTCAGGTGATTTGAGCATTAGGTTCTA
AAAAGCAGAACTCGCTTGACTGTTACAGTCTCTAGTTTGTGAAATGAGAATCATATTGTACCTG
TCTTTTTCTTTGCAGGTAATTTCCTATCAATCAAACAGAAATGGAAATCTGGTGATCAAGTAAC
CATGGAGCTACCAATGAGTATCAGAACCGAAGCTATAAAAGGTATAAACACACAGTTTTGCTTT
TGTAGACTGGTACCCTTACTCCGGCAATCTATAACTAGCAGTATATGTATAAATTGTATGCAAC
TCTGTTTTGACATTATTTTGTGAGTATTTCAGATGATCGGCCAGAGTACGCATCTCTTCAAGCC
ATACTCTATGGCCCCTACTTGTTAGCCGGACACACGAGCAGGGACTGGAGCATCACAACTCAGG
CTAAACCTGGAAAATGGATAACCCCTATACCTGAAACTCAAAACAGTTACCTTGTCACACTCTC
ACAACAATCTGGAAACGTATCTTACGTGTTTTCAAATAGCAACCAAACCATCACAATGAGAGTA
TCACCCGAGCCAGGGACACAAGATGCCGTTGCAGCGACTTTCAGGCTCGTGACTGATAATTCTA
AACCACGGATTTCGGGTCCAGAAGGACTAATTGGAAGGCTGGTCATGCTTGAGCCGTTTGATTT
CCCTGGCATGATTGTAAAGCAAGCAACTGATAGCTCCCTCACAGTTCAAGCTTCTTCTCCTAGT
GACAAAGGAGCTTCTAGCTTTCGGTTAGTATCTGGACTTGACGGGAAGCTAGGAAGCGTTTCGT
TAAGACTAGAGAGCAAAAAAGGTTGTTTTGTGTACAGCGATCAAACCCTAAAGCAAGGGACAAA
ACTAAGGCTAGAATGTGGTTCGGATGCGACTGATGAGAAGTTTAAAGAGGCAGCAAGCTTTAGT
TTAAAGACAGGAATGCATCAATACAATCCAATGAGTTTCGTGATGAGCGGAACACAGAGGAACT
TTGTGTTATCGCCATTGTTTAGCTTAAGAGATGAAACATACAATGTGTACTTCAGTGTGCAAAC
TTGAAGAAAGAAACCCTTATTGGGTGAAAATATAAGAAAGAAAAGTCTCATTTGAAATATAGAC
ATGTGTTTAGATGTTTAGCCTCTTAGGTTTGTTTGTGATTTTGTGTTCTGCAATGTCATCTAAA
AATGTATGTTGCTGTTACAATAAATATAAACAAATGTGTTTTTATAAATTGTGCTAACGATGAA
TCCATGTCTTTCTTTATATTCTAAATATAGAGTGGAGAATAGTGTGTTGCCTTGAGCTTTCATG
AAATAATATTCTCATATGTGATCTGTTGCAGAAATTAGAATACCATAGTTATTGTATCAAAATA
TCCAACACATGAAAAGTAAAATATCCAACAAAATCACACGCATAAACATTACTTACGAATACGA
TAGTTATTGTGTTTATGCGTGTGATTTTCACTTTGGTGGAGATAACTTCTATAGAAGAGGGGAG
AATATTATACAGTATTTTGGAAATATGTTATAATTTTGGAGAAATCACAAATCAAAGTTTATAA
TTACATTCAGGGAGATTTTACAAGATTATAGAAAAACTTTATAAGATTTTGGAAAAACTAATCA
TAGAAATTATACAAAATTCTCTAGTAATCATTTAAAATCTTTGACATATCTACTTTCTATATTT
TTTAAAAGTCATTAAAATTCTTTCAAAATCACAAACCAATAACACCCCCTTAATCTTTTTTTAC
AACAAATCCTCCTCTGTTTTTATCCAAATCCTCTCTGTTTTTATCCAAATCCTCCTCTGTTTTT
CTCTTTCACTTGATTGAATTCTTTTTTTAGCAGACATTGCTTCAATCGTTAGAAAATCTATTTT
TGGCACACATTTTCTTTAGAAATCTTTTGCTTTATAAACATCTCTTCTCATTATTTTCTTCTTC
CATTTCAAATCCCCTCTCCCTAACAGTTTTGAGTCTCTTGGATTCTGAACGTGGGATCTGGGGA
TTTGAATAGTTACACTTTTTTGTTTATGAAAAAACATACGATGAAGTCTGGTGTGATCATAACC
ATTGCTCTGTTATTATACACAAGCTTTCTTCTTGTTTGTCTGGCGAAAGAGTGTACAGACATTC
CTACGAAGCTCTCATCGCATACTCTCCGCAGCGAGCTTCTGCAATCACAGAACGCAAATTTGAA
GTCAGAGGAGTTCTCTCATTACCATTTAACTCCAACTGATGACTCTGCTTGGTCTACTTTGTTG
CCAAGGAAGATGTTGAAAGAAGAGACTGATGATTTTGCTTGGACTATGTTGTATAGAAAGTTCA
AGGACTCTAATTCCTCTGGTAACTTTCTCAAGGATGTCTCTTTGCACGACGTTAGGCTGGACCC
GAGCTCTTTCCATTGGAGGGCTCAGCAGACAAACCTTGAGTATCTATTGATGTTGGATGTTGAT
GGTTTGGCCTATAACTTCCGTAAAGAAGCTGGTCTTAATGCTCCTGGAGTTCCCTATGGAGGAT
GGGAGAAACCAGATAGTGAACTCCGTGGCCATTTTGTCGGTATAAACCTCTGCCTTTTTCCCCA
ATTCAATACACTTTCTTGATTCATGCTGTTGATAGTATGCAGGAAAAGGTTTTGAGATTTGATG
TTTGGTATAGATTGCATAGGCCCTTATAGGAATCACCTTTTGACATTTCATAGACACTTGAAAG
GATTTTAACTCTTACATTGCATAGAACCTTAAAGGAATGACCTTTTAGTTGATGGCTCAAAAAT
CTGTCTGTTTGTTTTGAAGGTCACTATTTGAGTGCAACAGCTTATATGTGGGCAAGTACTCATA
ACGAAACTCTCAAGGCGAAAATGACAGCTCTTGTCTCAGCTCTAGCGGAATGCCAGCAGAAATA
TGGCACAGGATATCTCTCAGCTTTCCCTTCCAGTTTTTTCGACCGGTTTGAAGCTATAACACAT
GTTTGGGCTCCTTACTATACCATTCACAAGGTGAATAGTCAGACCCTTTGACTGAGTTGAAGAT
TGATATGCTTATGTTTTGCAAGAGAGTAACATCTCTGTCTTAATTTTGACAGATTTTGGCCGGC
CTGGTGGATCAATACAAGTTGGCTGGGAATACTCAAGCTTTAAAGATGGCAACAGGGATGGCTG
ATTACTTTTATGGCCGTGTTCAAAATGTGATAAAGAAGTACAGTGTTGAACGACATTGGCTATC
ACTAAACGAAGAGACTGGTGGCATGAATGATGTTCTTTATCAGCTATACAGCATCACTGTGAGT
TAAAATCTTATCAGACTCTAAACTCCAACCTTAGATTTCTATCTAGCTTTGTGTTATATCATAG
TGTTTTGGACTCTGCAGAGAGATTCCAAGTATTTGTTTCTCGCACATCTCTTTGACAAGCCTTG
CTTTCTCGGAGTCCTCGCAATTCAGGTAATTTACTTGATGATTAGCTTGAAGCCTTGAAGAGAT
GTGAATGGTAAGGTCACATAACTTGACATGTTTGTTTGCAGGCCGATGATATTAGTGGATTCCA
CGCTAATACACATATTCCCATCGTCGTTGGATCCCAACAACGGTATGAAATCACTGGTGATCTA
CTCCATAAGGTATCGAAGAGTAACCAAGAAAAGTGTGACATTTTTATCAAAGAAGATATTGGTT
CTCTTGATTCTGAAATCTGCATTTCCAGGAAATCCCGATGTTCTTTATGGACATAGTTAATGCT
TCACACAGCTATGCAACTGGAGGAACATCAGTCAAAGAGTTCTGGTACTACCATTACTTGACTT
TAGAGTTTGGTTCTTTGTAACATGACTTTTTGTTTTAAGTCTTAACCATGATTTGGGAATATTT
AACATTAGGCAAGATCCAAAGAGAATGGCGACTACGTTGCAAACTGAAAACGAGGAATCATGTA
CTACTTATAACATGCTCAAGGTAGGATTTCAAACTTCCCCACACCCCCACCCCCCTCTTTTCAT
TTGCTCAACGTAACATATTGACACTTGTACAATTTCAGGTCTCTAGGAATCTGTTCAGATGGAC
AAAAGAGGTTAGCTATGCAGACTATTACGAGCGCGCTTTGACCAACGGTGTGCTCGGAATTCAA
AGAGGAACCGATCCCGGACGGATGATCTACATGCTCCCATTGGGTAAAGGTGTTTCTAAGGCTG
TGACTTATCACGGTTGGGGAACACCTTATGATTCCTTTTGGTGTTGCTATGGCACTGGTAAACT
TTTAACCACAATCATCTGGTTTTCTACATTTTTCTTGTTTCAAGACAGATTAATTTTGAGGTAA
TGGTAGTAATTGAATCTTTCTGTCCACAGGAATTGAATCCTTCTCAAAACTGGGAGATTCCATA
TATTTTCAAGAAGATGGTGCAACTCCAGCTCTTTATGTCACCCAATATATATCAAGCTCACTTG
ATTGGAAATCTGCTGGTCTTTCAATATCTCAGAAAGTTAATCCTGTTGTGTCGTGGGATCCGTA
CATGCGTGTGACATTCACTCTTTCTTCTTCCAAAGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.74772783
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017