Detail information of EPlOSAG00000049403_circ_ig.1


General Information
CircRNA Name EPlOSAG00000049403_circ_ig.1
ID in PlantcircBase osa_circ_023391
Alias NA
Organism Oryza sativa
Position chr4: 14093790-14094352  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0311100_circ_igg.1 Os04g0310900_circ_ig.2 Os04g0310900_circ_ig.3 Os04g0310900_circ_ig.4 Os04g0311100_circ_igg.5
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CA-GG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTAGTTTTTTTTAGTACTTGATGGACAATGATATTTTCCATCTTTTCACCACAAGAATACGC
TGCAATCTTCATGTAATGTATATTGCTGATCCCTTAgtatgcacctatatataagtccttcccc
ctgtagattgttgatatctaaactgtaattctttgggcctgaaatatattatgttggtgccatt
ttggttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATGCACCTATATATAAGTCCTTCCCCCTGTAGATTGTTGATATCTAAACTGTAATTCTTTGG
GCCTGAAATATATTATGTTGGTGCCATTTTGGTTCTTAAATTTTGAGTGACAAACTATTTGAAC
AATGTGATATATTAGTAAAAACAATAGCAATGACAAAATATGATGCTTTGAAGTCTAAATTCGC
AATTTGTTCCATGGAATAGCAAACTAAGTGTTTATCTCAGTACTTGTTGAGTGCTTCACATTTC
CTCATGCAGGTCAGAATTCACAGGAATTATCTTGACATGTGATCTCGTTTGCTTGAAAGTAGAT
TCAAATGCTGTTTTGTTATTTTCTTTCTTATCAAGCTTTCACAATTTCATGCTTCCACATTTTT
ACAGGCGTTTGGAAACTGTTGTGTTGCAATTTGGTGTTCTTAATTTTGTCGGTTTAAGGGTACT
TAGCATCGTTTCTGCCTGTAGTTTTTTTTAGTACTTGATGGACAATGATATTTTCCATCTTTTC
ACCACAAGAATACGCTGCAATCTTCATGTAATGTATATTGCTGATCCCTTA
Conservation Information
Conserved circRNAs NA
PMCS 0.325523801
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017