Detail information of Os04g0311100_circ_igg.5


General Information
CircRNA Name Os04g0311100_circ_igg.5
ID in PlantcircBase osa_circ_023390
Alias Os_ciR2684
Organism Oryza sativa
Position chr4: 14093714-14094496  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0311100_circ_igg.1 Os04g0310900_circ_ig.2 Os04g0310900_circ_ig.3 Os04g0310900_circ_ig.4 EPlOSAG00000049403_circ_ig.1
Support reads 5
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAACTTCAAACAAGGAACAAGAAGCATTGATTGACATCTTCTCAGAAGAAAGAGGTCGACGA
GACCTAGAAGAGGAAAATCTGCGAGGGAAGCTAAAGgttactgaaggtggaagaatcattgtca
caggagctggcgattgaacgtgataagaacaaatcgttaacagagagggtatgcacctatatat
aagtcctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTACTGAAGGTGGAAGAATCATTGTCACAGGAGCTGGCGATTGAACGTGATAAGAACAAATCG
TTAACAGAGAGGGTATGCACCTATATATAAGTCCTTCCCCCTGTAGATTGTTGATATCTAAACT
GTAATTCTTTGGGCCTGAAATATATTATGTTGGTGCCATTTTGGTTCTTAAATTTTGAGTGACA
AACTATTTGAACAATGTGATATATTAGTAAAAACAATAGCAATGACAAAATATGATGCTTTGAA
GTCTAAATTCGCAATTTGTTCCATGGAATAGCAAACTAAGTGTTTATCTCAGTACTTGTTGAGT
GCTTCACATTTCCTCATGCAGGTCAGAATTCACAGGAATTATCTTGACATGTGATCTCGTTTGC
TTGAAAGTAGATTCAAATGCTGTTTTGTTATTTTCTTTCTTATCAAGCTTTCACAATTTCATGC
TTCCACATTTTTACAGGCGTTTGGAAACTGTTGTGTTGCAATTTGGTGTTCTTAATTTTGTCGG
TTTAAGGGTACTTAGCATCGTTTCTGCCTGTAGTTTTTTTTAGTACTTGATGGACAATGATATT
TTCCATCTTTTCACCACAAGAATACGCTGCAATCTTCATGTAATGTATATTGCTGATCCCTTAC
ACAACCTTTTTGTTTTCCAGTTAGAGGATGCACAGAGGCAACTAGAAACTTCAAACAAGGAACA
AGAAGCATTGATTGACATCTTCTCAGAAGAAAGAGGTCGACGAGACCTAGAAGAGGAAAATCTG
CGAGGGAAGCTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.236688165
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015