Detail information of Os04g0310900_circ_ig.2


General Information
CircRNA Name Os04g0310900_circ_ig.2
ID in PlantcircBase osa_circ_023387
Alias Os04circ02681/Os_ciR2292
Organism Oryza sativa
Position chr4: 14089538-14090081  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0311100_circ_igg.1 Os04g0310900_circ_ig.3 Os04g0310900_circ_ig.4 Os04g0311100_circ_igg.5 EPlOSAG00000049403_circ_ig.1
Support reads 2/5/3
Tissues panicle/root/root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTATTAATGGTCAATATTGACCTTTTTGAATGCTTAGTATTCTGCTTCTGACCAATGCTTCT
TCGAATTGCATATACAAGTATCCAGATTGTGTTTATgtattattattgtcatttttttttctgt
tgtaatagtgttttttttgggtgttttgccttgtgaccatttattcaagtttctttgctttctc
caaccagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATTATTATTGTCATTTTTTTTTCTGTTGTAATAGTGTTTTTTTTGGGTGTTTTGCCTTGTGA
CCATTTATTCAAGTTTCTTTGCTTTCTCCAACCAGCTCTTATAATAATTACTCCAGATTTGTCA
CTTAAACTACCAGTTGGTGACTTAGTGGTGTTAGCCAAACTTGCATTTGTGATTTCCCCCCCCC
TCCCCTAGGTGGCAGCTAGTATTCAGGTGCCACCCTCCCACCTATGCAGACCCTCCGAATTAGA
TGATTAGGCAGTAGGCACTAGCCACCAGGTTGAGCCTATCACTTTCGTAACCTCTTGCCCCTTG
GTGAATACTGACATATGATGCTTGGTTAGCTACCACTTTTTTTGTTAAATGTCTAGGTTATTAG
CATATTACTTTCTTTGTGCTGTTAATGTTTCATTTCAGATAGTACGATTGACTGATTGACTTTT
ATTAATGGTCAATATTGACCTTTTTGAATGCTTAGTATTCTGCTTCTGACCAATGCTTCTTCGA
ATTGCATATACAAGTATCCAGATTGTGTTTAT
Conservation Information
Conserved circRNAs osi_circ_014224
PMCS 0.343584329
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA